View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_8 (Length: 444)
Name: NF4778_low_8
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 25097922 - 25097508
Alignment:
| Q |
18 |
caagatgcacacaaacaaacacaccataatagaatgaaagcaaaatattaatga-tgtataaatgatctagtaaaaaatggttatgaaaatgatgattga |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
25097922 |
caagatgcacacaaacaaacacactataatagaatgaaagcaaaatattaatggctgtataaatgatctagtaaaaaatggttgtaaaaatgatgattga |
25097823 |
T |
|
| Q |
117 |
tattagaatttgagttgaatctaaactctaatcgaatccttgtgaaaccgccttcaaaagtgaagacttttatccacttataacttatattaaaatctta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
25097822 |
tattagaatttgagttgaatctaaactctaatcgaatccttgtgaaatcgccttcaaaagtgaagacttttatcgacttatagcttatatttaaatctta |
25097723 |
T |
|
| Q |
217 |
tcttatt-taaggtgaaattattgacactcactcgcgcttaagactaaatatttaatgcacaacatgaatgacttggtagtggtggtctaatagcaaaaa |
315 |
Q |
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||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | |
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| T |
25097722 |
tctcatactaaggtgaaactattgacactcactcgcgcttaagactaaatatctaatgcacaacatgaatgacccgatagtggtggtctaatagcaaata |
25097623 |
T |
|
| Q |
316 |
actcaacgactaacatcttaatatttgagttagatctataactcaacatttacaaaatcaattagcaagatgatgattgctccacacttataaacttata |
415 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
25097622 |
actcaacgactaacatcttaaaatttgagttagatctataactcaacatttacaaaatcaattagtaagatgatgattgctccacccttataaacttatg |
25097523 |
T |
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| Q |
416 |
ttcagaccttcatct |
430 |
Q |
| |
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|||||||||| |||| |
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| T |
25097522 |
ttcagacctttatct |
25097508 |
T |
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