View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_9 (Length: 439)
Name: NF4778_low_9
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 13408618 - 13409039
Alignment:
| Q |
18 |
gtttcctgaggtctttaatgtactcaactgcttcatccaacatatcagctgtgctattttgctgccaagagggaagtagaagcatcaagtcaaccaattg |
117 |
Q |
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| T |
13408618 |
gtttcctgaggtctttaatgtactcaactgcttcatccaacatatcagctgtgctattttgctgccaagagggaagtagaagcatcaagtcaacaaattg |
13408717 |
T |
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| Q |
118 |
aggtgttatgtgctagtttggatcgacggtaagtgtgataatattacggtgtgccaccgtggttttagtaaaagttacattttgaaatacaacaagatag |
217 |
Q |
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| T |
13408718 |
atgtgttatgtgctagtttggatcgacggtaagtgtgataatattacggtgtgccaccgtggttttagtaaaagttacattttgaaatacaacaagatag |
13408817 |
T |
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| Q |
218 |
taaggtgtcattgtgattctgctaaactcgctgtcaatccaaatcttcaatatatttaccttatctgcattcgggaaaaggtcttgcagnnnnnnnattc |
317 |
Q |
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| T |
13408818 |
taaggtgtcattgtgattctgctaaactcgctgtcaatccaaatcttcaatatatttaccttatctgcattcgggaaaaggtcttgcagtttttttattc |
13408917 |
T |
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| Q |
318 |
ttgcactaattcttattcttctttcctgcaatgtacaaatcaagaaaataaatgaataagctcattaaattgcaacaaaatgtatccaagaaatttgtga |
417 |
Q |
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| T |
13408918 |
ttgcactaattcttattcttctttcctgcaatgtacaaatcaaggaaataaatgaataagctcattaaattgcaacaaaatgtatccaagaaatttgtga |
13409017 |
T |
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| Q |
418 |
ttatagcaaggttgttagactt |
439 |
Q |
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| T |
13409018 |
ttatagcaaggttgttagactt |
13409039 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 8696135 - 8696191
Alignment:
| Q |
26 |
aggtctttaatgtactcaactgcttcatccaacatatcagctgtgctattttgctgc |
82 |
Q |
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| T |
8696135 |
aggtctttaatgtactcaactgccaaatccaacatatctgctgtgcttgtttgctgc |
8696191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 9048022 - 9048078
Alignment:
| Q |
26 |
aggtctttaatgtactcaactgcttcatccaacatatcagctgtgctattttgctgc |
82 |
Q |
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| T |
9048022 |
aggtctttaatgtactcaactgccaaatccaacatatctgctgtgcttgtttgctgc |
9048078 |
T |
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