View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4779-Insertion-1 (Length: 997)
Name: NF4779-Insertion-1
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 175 - 919
Target Start/End: Original strand, 51518698 - 51519436
Alignment:
| Q |
175 |
catttgccaaataaacgtcctcaagcacattttaattgagtttgatnnnnnnnncagggcaatgtttcatatatttttatgacttaaa-ggactatgtgc |
273 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
51518698 |
catttgccaaataaacgtcctcaagcgcattttaattgagtt-gataaaaaaat-agggcaatgttgcatatatttttatgacttaaaaggactatgtgc |
51518795 |
T |
|
| Q |
274 |
acaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaacactaaactttaaggaatcaaggatacatttgat |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51518796 |
acaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaacactaaactttaaggaatcaaggatgcatttgac |
51518895 |
T |
|
| Q |
374 |
caaatttttaccattcaaagaaagagaatgtctattttaacataaaatgagagaaaagtttaattcaaatttctcttgaaaaattgactataaattactc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51518896 |
caaatttttaccattcaaagaaagagaatgtctattttaacataaaatgagagaaaagtttaattcaaatttctcttaaaaaattgactataaattactc |
51518995 |
T |
|
| Q |
474 |
ttgttttaatctctcttaccgtcnnnnnnnnaagaaatagagagaattataccactttataaatagagtcggaggaagtagtacacttcaacattacatg |
573 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51518996 |
ttgttttaatctctcttaccgtcttttttt-aagaaatagagagaattataccactttataaatagagtcggaggaagtagtacacttcaacattacatg |
51519094 |
T |
|
| Q |
574 |
caaccagtgatgtaattgtttgagattttaaatgcggaagttacaagagttctatcactctatatcgaaatggtaataaatcccaaaatcaagattgcta |
673 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51519095 |
caaccagtgatgtaattgtttgagattttaaatgcggaagttaaaagagttctatcactctatatcgaaatggtaataaatcacaaaatcaagattgcta |
51519194 |
T |
|
| Q |
674 |
aaaatatgaaatgaaggggtcacaacaataaccctaaaattaatttctgtgaacagtcgaatacatatactagcatctttacaatccaagtccaaagggc |
773 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51519195 |
aaaatatg-aatgaa-gggtcacaacaataaccctaaaattaatttctgtgaacagtcgaatacatatactagcatctttacaatccaagtccaaagggc |
51519292 |
T |
|
| Q |
774 |
aagtcaaattggcacattgattttgatttgaggagctagattcttgactaaaaaatatataaaagagaaagctacatggtgggatccacaaatagaccgt |
873 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51519293 |
aagtcaaattggcacattgattttgatttgaggagctagattcttgactaaaaaatatataaaagagaaagctacatggt-ggatccacaaatagaccgt |
51519391 |
T |
|
| Q |
874 |
agacctagaattccgcgttttttcagaattaatttctatctaatcc |
919 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51519392 |
agacctagaattccgcgttttttcag-attaatttctatctaatcc |
51519436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 51517489 - 51517660
Alignment:
| Q |
8 |
atataatctttggcaacaa----tatattcatctgaggg-agctagactcgtgtctcaaaagcaatatcttgtggttgagttatatggatggaaaaacgt |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51517489 |
atataatctttggcaacaaacaatatattcatctgaggggagctagactcgtgtctcaaaagcaatatcttgtggttgagttatatggatggaaaaacgt |
51517588 |
T |
|
| Q |
103 |
tatattcaatgaggattagtcatcaacgaagttacaaaaataagactctttagtaacaaagtatgattattg |
174 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51517589 |
tatatttaatgaagattagtcatcaacgaagttacaaaaataagactctttagtaacaaagtatgattattg |
51517660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 21518696 - 21518763
Alignment:
| Q |
249 |
ttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaac |
316 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||| |||||| ||| || |||||| |||||| |
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|
| T |
21518696 |
ttttacgacttaaaggattatgtgcacatttttactaacataaagaatcaacttaaaattaaaaaaac |
21518763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 249 - 355
Target Start/End: Complemental strand, 34366936 - 34366830
Alignment:
| Q |
249 |
ttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaacactaaact |
348 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||| |||| ||||||| |||| || ||||||||||| || ||||| |||||||| | |||| |
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|
| T |
34366936 |
ttttatgacttaaaggactaggtgcacacttctactaacataaaggaccaattagaaactaaaaaaactaaaaggactaatccggtacaaacattcaact |
34366837 |
T |
|
| Q |
349 |
ttaagga |
355 |
Q |
| |
|
| ||||| |
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|
| T |
34366836 |
taaagga |
34366830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 17053822 - 17053875
Alignment:
| Q |
249 |
ttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaattt |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| ||| ||| || |||||| |
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| T |
17053822 |
ttttatgacttaaaggactaagtgcacacttttactgacataaaaaatcaattt |
17053875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 49292292 - 49292384
Alignment:
| Q |
247 |
atttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaa |
339 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||| ||||| | ||||||| |||||||||||||||||||| || || ||||||| |||||| |
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|
| T |
49292292 |
atttttatgacttaaaggattaggtgcatactttaactaatataaagaactaatttgaaattataaaaactgaatggactaatctaatacaaa |
49292384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 30053698 - 30053621
Alignment:
| Q |
249 |
ttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgatt |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||| | ||| |||||| || ||||||||||| |||| |
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|
| T |
30053698 |
ttttatgacttaaaggactagatgcacaatttcactaacataaaggatcaaattgaaactaaaaaaactaaaaggatt |
30053621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 3371312 - 3371259
Alignment:
| Q |
249 |
ttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaattt |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| |||| || ||||| |
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|
| T |
3371312 |
ttttatgacttaaatgactatgtgcacaatgttactaacataaaggactaattt |
3371259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 11862524 - 11862625
Alignment:
| Q |
248 |
tttttatgacttaaaggactatgtgcacaattttactaacacaaagaaccaatttgaaattataaaaactaaaatgattaatctattacaaacactaaac |
347 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||| | ||| ||| |||||||||||| || ||||||| ||| || | |||| |||||||| ||||| |
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|
| T |
11862524 |
tttttatgacttaaaggactaggtgcatacttttattgacatcaaggaccaatttgaaactaaaaaaacttaaaggactgatctggtacaaacattaaac |
11862623 |
T |
|
| Q |
348 |
tt |
349 |
Q |
| |
|
|| |
|
|
| T |
11862624 |
tt |
11862625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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