View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779-Insertion-10 (Length: 343)
Name: NF4779-Insertion-10
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779-Insertion-10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 11890761 - 11891096
Alignment:
| Q |
8 |
taaggttagcagacaaagattttcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaac |
107 |
Q |
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| T |
11890761 |
taaggttagcagacaaagattttcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaac |
11890860 |
T |
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| Q |
108 |
agtttgggataagatgacaaaaacattgaaacagaaagctagtatttgtagtagaatgtttctggttttagttcttggacttgtaaccattttgtttgtg |
207 |
Q |
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| T |
11890861 |
agtttgggataagatgacaaaaacattgaaacagaaagctagtagtggtagtagaatgttgctggttttagttcttggacttgtaaccattttgtttgtg |
11890960 |
T |
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| Q |
208 |
ttgatgtgtttattgtttgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagtttggttgatctaggtgaaaacaatgaatgatgga |
307 |
Q |
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| T |
11890961 |
ttgatgtgtttattgtctgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagattggttgatctaggagaaaacaatgaatgatgga |
11891060 |
T |
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| Q |
308 |
gacaagctatgttgacttaggagacaagatgacatt |
343 |
Q |
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| T |
11891061 |
gacaagccatgttgacttaaaagataagatgacatt |
11891096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 11903105 - 11903440
Alignment:
| Q |
8 |
taaggttagcagacaaagattttcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaac |
107 |
Q |
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| T |
11903105 |
taaggttagcagacaaagattttcctgttggatcactttttacacttatgattgtgtagccataaccaacttgtgtttcttttgatggtgaatctgcaac |
11903204 |
T |
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| Q |
108 |
agtttgggataagatgacaaaaacattgaaacagaaagctagtatttgtagtagaatgtttctggttttagttcttggacttgtaaccattttgtttgtg |
207 |
Q |
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| T |
11903205 |
agtttgggataagatgacaaaaacattgaaacagaaagctagtagtggtagtagaatgttgctggttttagttcttggacttgtaaccattttgtttgtg |
11903304 |
T |
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| Q |
208 |
ttgatgtgtttattgtttgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagtttggttgatctaggtgaaaacaatgaatgatgga |
307 |
Q |
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| T |
11903305 |
ttgatgtgtttattgtctgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagtttggttcatcttggagaaaacaatgaatgatgga |
11903404 |
T |
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| Q |
308 |
gacaagctatgttgacttaggagacaagatgacatt |
343 |
Q |
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| T |
11903405 |
gacaagccatgttgacttagaagataagatgacatt |
11903440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 11896644 - 11896762
Alignment:
| Q |
225 |
tgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagtttggttgatctaggtgaaaacaatgaatgatggagacaagctatgttgact |
324 |
Q |
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| T |
11896644 |
tgtgggagacaattgaaaataatcatcaatttatgttttgtatacaagattggttgatctaggagaaaacaatgaatgatggagacaagccatgttgact |
11896743 |
T |
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| Q |
325 |
taggagacaagatgacatt |
343 |
Q |
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| T |
11896744 |
taaaagataagatgacatt |
11896762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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