View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779-Insertion-11 (Length: 224)
Name: NF4779-Insertion-11
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 5893501 - 5893717
Alignment:
| Q |
8 |
ggttagtcacttatcattactctttaatccttttaaataatcaannnnnnnattaaagttaaaa-aatgatgtggatattcaataataattaagcattat |
106 |
Q |
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| T |
5893501 |
ggttagtcacttatcattactctttagtccttttaaataatcaatttttttattaaagttaaaaaaatgatgtggatattcaataataattaagcattat |
5893600 |
T |
|
| Q |
107 |
catataattacatagaatgtttcttgtttgttttgcagtcattgatatttgctggaacagaaacctctgctacaacattagaatgggctatgtctaattt |
206 |
Q |
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| T |
5893601 |
catataattacatagaatgtttcttgtttgttttgcagtcattgatatttgctggaacagaaacctctgctacaacattagaatgggctatgtctaattt |
5893700 |
T |
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| Q |
207 |
gttaaaccatccagagg |
223 |
Q |
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||||||||||||||||| |
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| T |
5893701 |
gttaaaccatccagagg |
5893717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 14946168 - 14946205
Alignment:
| Q |
184 |
ttagaatgggctatgtctaatttgttaaaccatccaga |
221 |
Q |
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| T |
14946168 |
ttagaatgggcaatgtctaatttattaaaccatccaga |
14946205 |
T |
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