View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4779-Insertion-3 (Length: 893)

Name: NF4779-Insertion-3
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4779-Insertion-3
NF4779-Insertion-3
[»] chr3 (1 HSPs)
chr3 (8-638)||(11247246-11247857)


Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 638
Target Start/End: Complemental strand, 11247857 - 11247246
Alignment:
Q  8 caaagatcatggtattcgtgtgacggaaacaacggctgctgaccgtcgtgttgtgacggaggcggttgatggtcagattataggacggcgcgtggagcct 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11247857 caaagatcatggtattcgtgtgacggaaacaacggctgctaaccgtcgtgttgtgacggaggcggttgatggtcagattatagggcggcgcgtggagcct 11247758  T
Q  108 gacgcgcactttgtgcctatgaatatgggctctgcggctatagatggcgatccgatcaccatcggagaggcgttagaagcggcggggatatcggttggtg 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11247757 gatgcgcactttgtgcctatgaatatgggctctgcggctatagatggcgatccgatcaccatcggagaggcgttagaagctgcagggatatcggttggtg 11247658  T
Q  208 ataaaccggttgatcagaatgatgcggatgcgatcagtgctgctgagattagggccaccggagagaggtgtgtgaggcctggcggtgtcggggcaacggc 307  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||    
T  11247657 ataaaccggtggatcagaatgatgcggatgcgatcagtgctgctgagattagggctaccggagagaggtgtgtgaggcctgacggtgtcggggctacggc 11247558  T
Q  308 gcaatctgcggccactctcaacagccatgctaatcggattgaagagatgacaaaactttctgatgtgttaacggtatgaactaagaactctgttttatgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                
T  11247557 gcaatctgcggccactctcaacagccatgctaatcggattgaagagatgacaaaactttctgatgtgttaacggtatgaaataagaac------------ 11247470  T
Q  408 tctgtttttatcttgtgattgaaatattcatacaatatcacaattgattaggagtttaggacccttttgcttagttagttaaat----agtgttattaca 503  Q
    |||| ||||| |||| ||||||||| ||||||||| ||||||||| |        |||||||||||||| ||||||||||||||    ||  |||||| |    
T  11247469 tctgctttta-cttgagattgaaatgttcatacaagatcacaattta--------ttaggacccttttgattagttagttaaatactcaggtttattaaa 11247379  T
Q  504 aaagcaattatagttattgtatg-gtgattatttttgtagataaatctattgcattaagctaactggaaagattttaagtcatttataannnnnnnatga 602  Q
     ||||||||||||| |||||| |  |  |||||||||||||||||  |||||||||||||||||||||||||||||  || ||||||||       ||||    
T  11247378 taagcaattatagtgattgtaagaattgttatttttgtagataaaattattgcattaagctaactggaaagatttt--gtaatttataatttttttatga 11247281  T
Q  603 tcatgttaattatagaagttaaatatgaatgtgaaa 638  Q
    |||||||||||||| |||||||| ||||||||||||    
T  11247280 tcatgttaattata-aagttaaacatgaatgtgaaa 11247246  T

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