View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779-Insertion-4 (Length: 771)
Name: NF4779-Insertion-4
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 346 - 758
Target Start/End: Complemental strand, 4677768 - 4677358
Alignment:
| Q |
346 |
atttggaaggagtggatcgggatccatatgtccgctctcctacttgtctttttgtactagaggcagaagagaatccaaatacgtaca-cggactgacttc |
444 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
4677768 |
atttggaaggagtggatcgggatccatatgtctgctctcccacttgtctttttgtactagaggcagaagagaatccaaatacgtaaaacggactgacttc |
4677669 |
T |
|
| Q |
445 |
ctatagccactggatataataacttagttatgcattgacgatttttcaccatgacatatagtatgtttcttaatatatatggcatgacaggagaatgctg |
544 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4677668 |
ctattgccactggatataataacttagttatgcattgacgatttttcaccatgacatatagtacgtttcttaatatatatggcatgacaggagaatgctg |
4677569 |
T |
|
| Q |
545 |
atgaaaaaagtaaagttatagttgctgtgcgacaagggaacatactggcgactgcttttcatcctgaattgacagctgatactcgatggtagataatttg |
644 |
Q |
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| T |
4677568 |
atgaaaaaagcaaagttatagttgctgtgcgacaagggaacatactggcgactgcttttcatcctgaattgacagctgatactcgatggtagataatttg |
4677469 |
T |
|
| Q |
645 |
atttttgccgtttgaaccttacaagttataatgttatatgatatatggagtggacttcaaatgttaaatttttgcaggcatagtttattttcttgaagat |
744 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
4677468 |
atttttgccgtttgaaccttacaagttataatgttatattgtatatggagtggacttcaaacgttatatttttgcaggcatagtt--atttcttgaagat |
4677371 |
T |
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| Q |
745 |
ggggaaatgtgacc |
758 |
Q |
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| T |
4677370 |
-gggaaatgtgacc |
4677358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 4678108 - 4677823
Alignment:
| Q |
7 |
atcaatgttataatgcactgttacgtacggtatttaaaccacttaactataaaaaatggcctaatattaatactctatcgaacatttatgctatttagtt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
4678108 |
atcaatgttataatgcactgttacgtacggtatttaaaccacttaactataaaaaatggtctaatagtaatactctatcgaacatttatgctatttagtt |
4678009 |
T |
|
| Q |
107 |
cttaacttgaaaagatggatgcttggatttggaatcaatcttcctgatcatagtttttctagtctccagtctctatctttctcataattcatccatttct |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4678008 |
cttaacttgaaaagatggatgcttggatttggagtcaatcttcctgatcatagttttcctagtctccagtctctatctttctcataattcatccatttct |
4677909 |
T |
|
| Q |
207 |
ctacattatgtaaccctccttcccaacattctttgctgggatttggatcctctccttcctctcatgcacaataagacaaacgatgt |
292 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677908 |
ctacattatataaccctccttcccaacattctttgctgggatttggatcctctccttcctctcatgcacaataagacaaacgatgt |
4677823 |
T |
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