View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4779-Insertion-7 (Length: 390)

Name: NF4779-Insertion-7
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4779-Insertion-7
NF4779-Insertion-7
[»] chr5 (10 HSPs)
chr5 (8-390)||(42438947-42439329)
chr5 (23-88)||(2483710-2483776)
chr5 (23-88)||(22482239-22482305)
chr5 (46-91)||(10273265-10273310)
chr5 (23-88)||(29922992-29923057)
chr5 (24-88)||(2868350-2868414)
chr5 (23-74)||(22811076-22811127)
chr5 (23-74)||(35760239-35760290)
chr5 (28-89)||(6988217-6988278)
chr5 (24-88)||(14671118-14671181)
[»] chr6 (4 HSPs)
chr6 (23-88)||(16442349-16442415)
chr6 (23-74)||(16548175-16548226)
chr6 (23-88)||(10874208-10874273)
chr6 (22-75)||(25208717-25208770)
[»] scaffold0172 (1 HSPs)
scaffold0172 (23-88)||(15257-15322)
[»] chr2 (13 HSPs)
chr2 (23-88)||(12110919-12110984)
chr2 (34-88)||(13475947-13476001)
chr2 (28-81)||(3654787-3654840)
chr2 (23-91)||(23359924-23359993)
chr2 (48-108)||(9943534-9943593)
chr2 (23-75)||(14443217-14443269)
chr2 (22-74)||(42089540-42089592)
chr2 (23-90)||(1763265-1763332)
chr2 (23-74)||(1945051-1945102)
chr2 (23-74)||(2213551-2213602)
chr2 (23-74)||(28127299-28127350)
chr2 (23-74)||(31224725-31224776)
chr2 (23-74)||(34433318-34433369)
[»] chr1 (11 HSPs)
chr1 (23-88)||(4347034-4347099)
chr1 (23-88)||(40352451-40352516)
chr1 (23-88)||(20800277-20800343)
chr1 (23-88)||(35569202-35569268)
chr1 (23-88)||(12655336-12655401)
chr1 (22-69)||(15477712-15477759)
chr1 (23-90)||(47981794-47981861)
chr1 (23-74)||(48510968-48511019)
chr1 (26-88)||(13344836-13344898)
chr1 (28-74)||(47085898-47085944)
chr1 (44-88)||(18325317-18325361)
[»] chr3 (10 HSPs)
chr3 (23-75)||(42644298-42644350)
chr3 (8-74)||(41114991-41115057)
chr3 (23-88)||(44225601-44225666)
chr3 (23-74)||(7012676-7012727)
chr3 (23-74)||(23496353-23496404)
chr3 (23-74)||(26519700-26519751)
chr3 (23-74)||(31084243-31084294)
chr3 (23-74)||(50664794-50664845)
chr3 (26-91)||(10852709-10852775)
chr3 (23-75)||(34561144-34561196)
[»] chr8 (14 HSPs)
chr8 (23-88)||(31246314-31246380)
chr8 (23-88)||(1373083-1373148)
chr8 (23-88)||(36779435-36779500)
chr8 (23-75)||(19649230-19649282)
chr8 (23-90)||(30081648-30081715)
chr8 (27-91)||(40991571-40991635)
chr8 (23-75)||(43550935-43550987)
chr8 (23-74)||(22936807-22936858)
chr8 (23-74)||(41289072-41289123)
chr8 (23-89)||(1836139-1836205)
chr8 (23-88)||(29970846-29970911)
chr8 (23-75)||(15206740-15206792)
chr8 (24-88)||(38516343-38516407)
chr8 (48-88)||(41891819-41891859)
[»] chr7 (9 HSPs)
chr7 (23-88)||(42752177-42752243)
chr7 (23-74)||(38230125-38230176)
chr7 (23-74)||(48459767-48459818)
chr7 (23-88)||(39634151-39634217)
chr7 (23-88)||(15311203-15311268)
chr7 (26-90)||(38494276-38494341)
chr7 (23-90)||(3750743-3750811)
chr7 (44-88)||(7169018-7169062)
chr7 (26-74)||(10371959-10372007)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-88)||(65536-65601)
[»] chr4 (15 HSPs)
chr4 (23-88)||(38740302-38740367)
chr4 (23-74)||(16566326-16566377)
chr4 (23-74)||(29149321-29149372)
chr4 (23-74)||(36150625-36150676)
chr4 (27-95)||(39438886-39438955)
chr4 (23-108)||(22699763-22699849)
chr4 (23-88)||(38306032-38306098)
chr4 (23-88)||(42944897-42944963)
chr4 (27-88)||(54488630-54488692)
chr4 (51-88)||(8283591-8283628)
chr4 (23-88)||(17898057-17898121)
chr4 (23-91)||(22980698-22980767)
chr4 (23-91)||(22994285-22994354)
chr4 (48-88)||(5025575-5025615)
chr4 (26-74)||(27045553-27045601)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 42439329 - 42438947
Alignment:
Q  8 actttcatgcaaacctatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatttttatcaaggcagaaccaa 107  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42439329 acttttatgcaaacctatccaaacataaatcactccacaatcaactcacttctaagtaaaatcaatttcacaaaatcaatttttatcaaggcagaaccaa 42439230  T
Q  108 atatatgcacataatcaacatcttacatataataacatcgcctcgcacaatcaattactacggactcaacgcaaactcgattgaaatgcatcaaaacata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42439229 atatatgcacataatcaacatcttacatataataacatcgcctcgcacaatcaattactacggactcaacgcaaactcgattgaaatgcatcaaaacata 42439130  T
Q  208 taataaagaatttaaaaaatacaaaatcaacatcttacatgccagtggagtttccagatggaacagaagcacgaaacatagctttattagtatacaaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42439129 taataaagaatttaaaaaatacaaaatcaacatcttacatgccagtggagtttccagatggaacagaagcacgaaacatagctttattagtatacaaatc 42439030  T
Q  308 aacttcaacagttggaattcctctactatcaagaatttgcctcgctttcactttcgtaatcaccgattgtactccttttttca 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42439029 aacttcaacagttggaattcctctactatcaagaatttgcctcgctttcactttcgtaatcaccgattgtactccttttttca 42438947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 2483776 - 2483710
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttc-acaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| ||| ||||||||||| | ||||||||||||    
T  2483776 tatccaaacataaatcaattcacattcaactcacttttaactaaaatcaattccaacaaaatcaatt 2483710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 22482239 - 22482305
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||| || |||||||||||    
T  22482239 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 22482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 10273310 - 10273265
Alignment:
Q  46 attcaactcacttctaagtaaaatcaatttcacaaaatcaattttt 91  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||||    
T  10273310 attcaactcacttataagtaaaattaattttacaaaatcaattttt 10273265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 29922992 - 29923057
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| ||| |||||||||||||||| ||   ||||||||||| ||| ||||||||    
T  29922992 tatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaatt 29923057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 2868414 - 2868350
Alignment:
Q  24 atccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||| |||||||||  ||||||||||||||| ||| |||||||||||  ||||||| ||||    
T  2868414 atccaaacttaaatcactttacattcaactcacttttaactaaaatcaattctacaaaattaatt 2868350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 22811076 - 22811127
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||||||||||  ||||||||||||||| |||  ||||||||||    
T  22811076 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 22811127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 35760239 - 35760290
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||||    
T  35760239 tatccaaacataaatcaattcacattcaactcactttttagcaaaatcaatt 35760290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 6988217 - 6988278
Alignment:
Q  28 aaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaattt 89  Q
    |||||||||||| |  | |||||||| |||| ||| |||||||||||| |||||||||||||    
T  6988217 aaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaattt 6988278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 14671118 - 14671181
Alignment:
Q  24 atccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||| ||| ||||||||| |||||| ||   | ||||||||||||||||||||||    
T  14671118 atccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaatt 14671181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 16442415 - 16442349
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| ||| ||||||||||| || |||||||||||    
T  16442415 tatccaaacataaatcaattcacattcaactcacttgtaactaaaatcaattctctcaaaatcaatt 16442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 16548175 - 16548226
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  16548175 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 10874273 - 10874208
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||| |||| |||||||||||||| | ||  |||||||||||  ||||||| ||||    
T  10874273 tatccaaacataaaccacttcacattcaactcacatttacctaaaatcaattatacaaaattaatt 10874208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 25208717 - 25208770
Alignment:
Q  22 ctatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    ||||| |||||||||||| |  ||||||||||||||| ||| ||||||||||||    
T  25208717 ctatcgaaacataaatcattttacattcaactcacttttaattaaaatcaattt 25208770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 15322 - 15257
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  | ||||||||||||| |||  ||||||||||| ||||||||||||    
T  15322 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaatt 15257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 12110919 - 12110984
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  | ||||||||||||| |||  ||||||||||| ||||||||||||    
T  12110919 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaatt 12110984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 13475947 - 13476001
Alignment:
Q  34 aaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||  |||||||| |||||| |||||||||||||||| ||||||||||||    
T  13475947 aaatcactttacattcaattcacttataagtaaaatcaatttaacaaaatcaatt 13476001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3654840 - 3654787
Alignment:
Q  28 aaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaa 81  Q
    |||||||| ||||| |||||||||||||||| ||| |||||||||||| |||||    
T  3654840 aaacataagtcactgcacattcaactcacttttaactaaaatcaattttacaaa 3654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 23359993 - 23359924
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaattttt 91  Q
    |||||||||||||||||||  ||||||||||||||| |||  |||||||||| |  ||||||||||||||    
T  23359993 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaatcaattttt 23359924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 9943534 - 9943593
Alignment:
Q  48 tcaactcacttctaagtaaaatcaatttcacaaaatcaatttttatcaaggcagaaccaaa 108  Q
    |||| |||||| |||||||||| |||| |||||||||||||||| ||| ||||||||||||    
T  9943534 tcaattcacttttaagtaaaattaatt-cacaaaatcaatttttgtcacggcagaaccaaa 9943593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 14443269 - 14443217
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    |||||||||||||| || | ||||||||||||| ||| |||||||||||||||    
T  14443269 tatccaaacataaaccatttcacattcaactcatttcgaagtaaaatcaattt 14443217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 42089592 - 42089540
Alignment:
Q  22 ctatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  42089592 ctatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 42089540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 1763265 - 1763332
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatttt 90  Q
    |||| ||||||||||||||  | |||||||||| || |||  ||||||||||| ||||||||||||||    
T  1763265 tatctaaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaatttt 1763332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 1945102 - 1945051
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  1945102 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 1945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 2213551 - 2213602
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||||    
T  2213551 tatccaaacataaatcaattcacattcaactcactttttagcaaaatcaatt 2213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 28127350 - 28127299
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||||    
T  28127350 tatccaaacataaatcaattcacattcaactcactttttagcaaaatcaatt 28127299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 31224725 - 31224776
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | ||||| |||||||||| ||| |||||||||||    
T  31224725 tatccaaacataaatcaattcacatccaactcacttttaactaaaatcaatt 31224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 34433369 - 34433318
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  34433369 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 34433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 4347034 - 4347099
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||||||||||||| |||  ||||||||||  ||||||||||||    
T  4347034 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaatt 4347099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 40352451 - 40352516
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||| ||||||||| |||  |||||||||| |||||||||||||    
T  40352451 tatccaaacataaatcactttacattaaactcacttttaaccaaaatcaattccacaaaatcaatt 40352516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 20800343 - 20800277
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||| || |||||||||||    
T  20800343 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 20800277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 35569268 - 35569202
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||| || |||||||||||    
T  35569268 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 35569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 12655336 - 12655401
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||| ||||||| | || || ||||||||||| ||| |||||||||||||||||||| ||||||||    
T  12655336 tatctaaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaatt 12655401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15477759 - 15477712
Alignment:
Q  22 ctatccaaacataaatcactccacattcaactcacttctaagtaaaat 69  Q
    ||||||| |||||||||||| |||||||||||||||  ||||||||||    
T  15477759 ctatccagacataaatcacttcacattcaactcactattaagtaaaat 15477712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 47981861 - 47981794
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatttt 90  Q
    |||||||||||||||||||  | |||||||||| || |||  ||||| ||||| ||||||||||||||    
T  47981861 tatccaaacataaatcactttaaattcaactcaattttaaccaaaattaattttacaaaatcaatttt 47981794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 48510968 - 48511019
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  48510968 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48511019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 13344836 - 13344898
Alignment:
Q  26 ccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||||  || |||||||||||| |||  ||||||||||  ||||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaatt 13344898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 47085898 - 47085944
Alignment:
Q  28 aaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||| | |||||||||||||||| ||| |||||||||||    
T  47085898 aaacataaatcaattcacattcaactcacttttaattaaaatcaatt 47085944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 18325361 - 18325317
Alignment:
Q  44 acattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| || ||||||||||||| |||||| |||||    
T  18325361 acattcaactcacttttatgtaaaatcaattttacaaaaccaatt 18325317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 42644298 - 42644350
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    |||||||||||||||||||  ||||||||||||||| ||| ||||||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaattt 42644350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 41115057 - 41114991
Alignment:
Q  8 actttcatgcaaacctatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||| |||||||  |||||||||||||| ||||  ||||||||| |||| ||||||||||||||||    
T  41115057 acttttatgcaaatgtatccaaacataaaccacttaacattcaacacactgctaagtaaaatcaatt 41114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 44225601 - 44225666
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||| ||||||||| |||  ||||||||||  ||||||||||||    
T  44225601 tatccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaatt 44225666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 7012676 - 7012727
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||||||||||  ||||||||||||||| |||  ||||||||||    
T  7012676 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 7012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 23496353 - 23496404
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  23496353 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 23496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26519700 - 26519751
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||||    
T  26519700 tatccaaacataaatcaattcacattcaactcactttttagcaaaatcaatt 26519751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 31084243 - 31084294
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  31084243 tatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 31084294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 50664794 - 50664845
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  50664794 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 50664845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 10852775 - 10852709
Alignment:
Q  26 ccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaattttt 91  Q
    ||||||||||||||||  ||||||||||||||| |||  |||||||||| |  ||||||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaattataccaaaatcaattttt 10852709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 34561144 - 34561196
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    ||||||||||||||||| | | |||||||||||||| |||  |||||||||||    
T  34561144 tatccaaacataaatcaattcgcattcaactcacttttaaccaaaatcaattt 34561196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 31246380 - 31246314
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||| | ||||||||||||    
T  31246380 tatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 31246314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 1373083 - 1373148
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||||||| ||  |||||||||||| ||   ||||||||||| ||||||||||||    
T  1373083 tatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaatt 1373148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 36779435 - 36779500
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| |||  ||||||||||||||| |||  ||||||||||  ||||||||||||    
T  36779435 tatccaaacataaattactttacattcaactcacttttaatcaaaatcaattctacaaaatcaatt 36779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 19649230 - 19649282
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    |||||||||||||||||||  ||||||||||||||| |||  |||||||||||    
T  19649230 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattt 19649282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 30081715 - 30081648
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt-cacaaaatcaatttt 90  Q
    ||||||||||||||||| | ||| || ||||||||| ||| |||||||||||| |||||||||||||||    
T  30081715 tatccaaacataaatcaattcacttt-aactcacttttaactaaaatcaattttcacaaaatcaatttt 30081648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 40991635 - 40991571
Alignment:
Q  27 caaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaattttt 91  Q
    ||||||||||  |||  |||||||||||| || |||||||||||| ||| |||||||||||||||    
T  40991635 caaacataaacaactttacattcaactcatttttaagtaaaatcatttttacaaaatcaattttt 40991571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 43550935 - 43550987
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||||    
T  43550935 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattt 43550987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 22936858 - 22936807
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  22936858 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 22936807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 41289123 - 41289072
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||| ||||||||||| ||| |||||||||||    
T  41289123 tatccaaacataaatcaattcacaatcaactcacttttaattaaaatcaatt 41289072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 1836205 - 1836139
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaattt 89  Q
    ||||||||||||||| ||| |||||||||| |||||   | |||||||||||  |||||||||||||    
T  1836205 tatccaaacataaataacttcacattcaacccactttagattaaaatcaattctacaaaatcaattt 1836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 29970846 - 29970911
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  | | ||||||||||| ||| |||||||||||  ||||| ||||||    
T  29970846 tatccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaatt 29970911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 15206740 - 15206792
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaattt 75  Q
    ||||||||||||||||| | |||||||||||||||| ||   |||||||||||    
T  15206740 tatccaaacataaatcaattcacattcaactcacttttacccaaaatcaattt 15206792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 38516343 - 38516407
Alignment:
Q  24 atccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||||||  ||||||||||||||  ||   ||||||||||  ||||||||||||    
T  38516343 atccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaatt 38516407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 41891859 - 41891819
Alignment:
Q  48 tcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  41891859 tcaactcacttctaactaaaatcaattctacaaaatcaatt 41891819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 42752243 - 42752177
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||| | ||||||||||||    
T  42752243 tatccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 42752177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 38230125 - 38230176
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  38230125 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 38230176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 48459767 - 48459818
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  48459767 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 48459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 39634217 - 39634151
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | || ||||||||||||| |||  |||||||||| | ||||||||||||    
T  39634217 tatccaaacataaatcaattcatattcaactcacttttaaccaaaatcaattctaacaaaatcaatt 39634151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 15311268 - 15311203
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||||||||||||| |||  | | ||||||| ||| ||||||||    
T  15311268 tatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaatt 15311203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 38494276 - 38494341
Alignment:
Q  26 ccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatttt 90  Q
    ||||||||||| |||| |||||||||||||||| |||  ||||||||||   ||||||||||||||    
T  38494276 ccaaacataaaccacttcacattcaactcacttttaaccaaaatcaattcaaacaaaatcaatttt 38494341  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 3750743 - 3750811
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatttt 90  Q
    ||||||||||||||||| | ||||| |||||||||| |||  |||||||||| || |||| ||||||||    
T  3750743 tatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattctctcaaactcaatttt 3750811  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 7169018 - 7169062
Alignment:
Q  44 acattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| |||  ||||||||||||| ||||||||||    
T  7169018 acattcaactcacttttaaccaaaatcaatttcaaaaaatcaatt 7169062  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 10372007 - 10371959
Alignment:
Q  26 ccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  10372007 ccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 10371959  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 65536 - 65601
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||| |||||| || |||  ||||||||||||||| ||||||||    
T  65536 tatccaaacataaatcactttacattaaactcatttttaaccaaaatcaatttcacagaatcaatt 65601  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 38740367 - 38740302
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||||||| ||  |||||||||||| ||   ||||||||||| ||||||||||||    
T  38740367 tatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaatt 38740302  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 16566326 - 16566377
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| |||  ||||||||||    
T  16566326 tatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaatt 16566377  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29149372 - 29149321
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    ||||||||||||||||| | |||||||||||||||| | || ||||||||||    
T  29149372 tatccaaacataaatcaattcacattcaactcactttttagcaaaatcaatt 29149321  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 36150625 - 36150676
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||||||||||  ||||||||||||||| |||  ||||||||||    
T  36150625 tatccaaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 39438886 - 39438955
Alignment:
Q  27 caaacataaatcactccacattcaactcacttctaagtaaaatcaatttca--caaaatcaatttttatca 95  Q
    ||||||||||  ||| |||||||||||||||| |||||||||| || ||||  ||||||||||||||||||    
T  39438886 caaacataaacaacttcacattcaactcacttttaagtaaaattaa-ttcattcaaaatcaatttttatca 39438955  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 22699763 - 22699849
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatttttatcaaggcagaaccaaa 108  Q
    |||||||||||||||||||  |||||||||| |||| |||  |||||||||| |  |||||||||||||| |||  ||| |||||||    
T  22699763 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccgcacaaccaaa 22699849  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 38306032 - 38306098
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||||||| | | |||||||||||||| |||  |||||||||| | ||||||||||||    
T  38306032 tatccaaacataaatcaattcgcattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 38306098  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 42944963 - 42944897
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    |||| |||||||||||| | |||||||||||||||| |||  |||||||||| || |||||||||||    
T  42944963 tatctaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 42944897  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 54488630 - 54488692
Alignment:
Q  27 caaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaatt 88  Q
    ||||||||||||| | |||||||||||||||| |||  |||||||||| | ||||||||||||    
T  54488630 caaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaatt 54488692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 8283628 - 8283591
Alignment:
Q  51 actcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  8283628 actcacttttaagtaaaatcaattttacaaaatcaatt 8283591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 17898121 - 17898057
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    |||||||||||||||||||  ||||||||||||||| | || | ||||||||  ||||||||||||    
T  17898121 tatccaaacataaatcactttacattcaactcactt-tcagcagaatcaattatacaaaatcaatt 17898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 22980767 - 22980698
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaattttt 91  Q
    |||||||||||||||||||  |||||||||| |||| |||  |||||||||| |  ||||||||||||||    
T  22980767 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaattttt 22980698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 22994354 - 22994285
Alignment:
Q  23 tatccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt-tcacaaaatcaattttt 91  Q
    |||||||||||||||||||  |||||||||| |||| |||  |||||||||| |  ||||||||||||||    
T  22994354 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaattttt 22994285  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 5025575 - 5025615
Alignment:
Q  48 tcaactcacttctaagtaaaatcaatttcacaaaatcaatt 88  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  5025575 tcaactcacttctaactaaaatcaattctacaaaatcaatt 5025615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 27045553 - 27045601
Alignment:
Q  26 ccaaacataaatcactccacattcaactcacttctaagtaaaatcaatt 74  Q
    |||||||||||| |||| |||||||||| |||| ||| |||||||||||    
T  27045553 ccaaacataaataactctacattcaacttacttttaactaaaatcaatt 27045601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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