View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_high_10 (Length: 251)
Name: NF4779_high_10
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 40076852 - 40076599
Alignment:
| Q |
1 |
aactcactagtgaaggaaagaatgaatgaactttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaa |
100 |
Q |
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| T |
40076852 |
aactcactagtgaaggaaagaatgaatgaactttggtttgg-----attatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaa |
40076758 |
T |
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| Q |
101 |
gtgatgatgg-ttgtaagaagaacaagggtaaggtgctacaagtactgtataacatgtgtaatgtgc------------gaaggaaatgccaggtgtaag |
187 |
Q |
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| T |
40076757 |
gtgatgatggtttgtaagaagaacaagagtaaggtgctacaagtactgtataacatgtgtaatgtgcattctatgaggagaaggaaatgccaggtgtaag |
40076658 |
T |
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| Q |
188 |
ctgtttgttgacaaacaaaaaggttgtcggtggtgacattgttgtcttcctatgctact |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40076657 |
ctgtttgttgacaaacaaaaaggttgtcggtggtgacattgttgtcttcctaggctact |
40076599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40058838 - 40058713
Alignment:
| Q |
1 |
aactcactagtgaaggaaagaatgaatgaactttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaa |
100 |
Q |
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| T |
40058838 |
aactcactagggaaagaaggaatgaatgaactttggtttggttt-----atttgttacgcatgtgtttgtattttttggtcacgtgggtgtgaaatgtaa |
40058744 |
T |
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| Q |
101 |
gtgatgatggttgtaagaagaacaagggtaa |
131 |
Q |
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| T |
40058743 |
gtgatgatgctttgaagaagaacaagagtaa |
40058713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 40084751 - 40084664
Alignment:
| Q |
30 |
actttggtttggtttggattatatgttacacatgtgtttgtgttttttggtcacgtgggtgtgaaatgtaagtgatgatggttgtaagaagaaca |
124 |
Q |
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||||||||||||||||| |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||| |
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| T |
40084751 |
actttggtttggtttggtttatttgttaca--tgtgttt-----ttttggtcacgtggatgtgaaatgtaagtgatgatgcttagaagaagaaca |
40084664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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