View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_high_2 (Length: 405)
Name: NF4779_high_2
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 11890393 - 11890611
Alignment:
| Q |
17 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890393 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
11890492 |
T |
|
| Q |
117 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataatcatataattat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11890493 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataatcatatgattat |
11890592 |
T |
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| Q |
217 |
atatgtttgattgcttttg |
235 |
Q |
| |
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||||||||||||||||||| |
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| T |
11890593 |
atatgtttgattgcttttg |
11890611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 11902737 - 11902955
Alignment:
| Q |
17 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902737 |
gagatgaagatgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctc |
11902836 |
T |
|
| Q |
117 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataatcatataattat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11902837 |
aaaactgcaattcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataatcatatgattat |
11902936 |
T |
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| Q |
217 |
atatgtttgattgcttttg |
235 |
Q |
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||||||||||||||||||| |
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| T |
11902937 |
atatgtttgattgcttttg |
11902955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 11890663 - 11890766
Alignment:
| Q |
287 |
ctatgattggttgttggttagttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccaaggaggatttgatgagttta |
386 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11890663 |
ctatgattggttattggttagttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccgaggaggatttgatgagttta |
11890762 |
T |
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| Q |
387 |
aggt |
390 |
Q |
| |
|
|||| |
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|
| T |
11890763 |
aggt |
11890766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 11903007 - 11903110
Alignment:
| Q |
287 |
ctatgattggttgttggttagttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccaaggaggatttgatgagttta |
386 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11903007 |
ctatgattggttattggttagttagttagttagttacctggcactgaggttgagaagtggaatgtcgggtccgaaaaccgaggaggatttgatgagttta |
11903106 |
T |
|
| Q |
387 |
aggt |
390 |
Q |
| |
|
|||| |
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|
| T |
11903107 |
aggt |
11903110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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