View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4779_high_5 (Length: 338)
Name: NF4779_high_5
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 4678103 - 4678416
Alignment:
| Q |
19 |
attgatttgtgtatcacctgacccaaacatagatgccccccaagcaaacaagtttagattaaatggtacatgtggcggctactgagtaaacactcctcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678103 |
attgatttgtgtatcacctgacccaaacatagatgccccccaagcaaacaagtttagattaaatggtacatgtggcggctactgagtaaacactcctcta |
4678202 |
T |
|
| Q |
119 |
gattccagtaaaattcaggtgtacgtccaaatccattctctctagtttaagaaattaattacagcatatatatactacattg-------gaaaaactgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4678203 |
gattccagtaaaattcaggtgtacgtccaaatccattctcgctagtttaagaaattaattacagcatatatatactacattggaaaaacgaaaaactgtt |
4678302 |
T |
|
| Q |
212 |
ttccaattcttcaacgagggaactaaacttatcatctttccatagaaaacatagtaaccactaggcataacaaaattcaaaattattgtcaccttgtgct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678303 |
ttccaattcttcaacgagggaactaaacttatcatctttccatagaaaacatagtaaccactaggcataacaaaattcaaaattattgtcaccttgtgct |
4678402 |
T |
|
| Q |
312 |
aatcctataaacct |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4678403 |
aatcctataaacct |
4678416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University