View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_high_8 (Length: 274)
Name: NF4779_high_8
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_high_8 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 1891073 - 1891299
Alignment:
| Q |
30 |
aatcaactcatgttttatatcgggttcgttcgtgttccctacctacttacacaatgtttaaattattattggtagcatcatttagtataacattttgaat |
129 |
Q |
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| T |
1891073 |
aatcaactcatgttttatatcgggttcgttcgtgttccctac----ttacacaatgtttaaattatt---ggtaggat------gtgttac---ttgaac |
1891156 |
T |
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| Q |
130 |
tgtattatgcttaatatgatgatatgctttatataccaagagatccgtatttgctcccccaaaaggatcagcagctacggtaacaaatccgagcgagctc |
229 |
Q |
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| T |
1891157 |
tgtattatgcttaatatgatgataggctttatataccaagagatccgtatttgctcccccaaaaggatcaacagctgcggtaacaaatccaagtgacctc |
1891256 |
T |
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| Q |
230 |
ctcctttcagctctggaggagagtaatccaacatctcttcttc |
272 |
Q |
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| T |
1891257 |
ctcctttcagctctggaggagagtaatccaacatctcttcttc |
1891299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 1887972 - 1888087
Alignment:
| Q |
157 |
tttatataccaagagatccgtatttgctcccccaaaaggatcagcagctacggtaacaaatccgagcgagctcctcctttcagctctggaggagagtaat |
256 |
Q |
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| T |
1887972 |
tttacataccaagagattcatatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgagctcctcctttcagttctagaggagagtaat |
1888071 |
T |
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| Q |
257 |
ccaacatctcttcttc |
272 |
Q |
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| T |
1888072 |
ccaacatctcttcttc |
1888087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 1670515 - 1670400
Alignment:
| Q |
157 |
tttatataccaagagatccgtatttgctcccccaaaaggatcagcagctacggtaacaaatccgagcgagctcctcctttcagctctggaggagagtaat |
256 |
Q |
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| T |
1670515 |
tttacataccaagagattcgtatttgctcccccaaaaggatcagcagccgcagagaaaaatccaagtgagctcctcctttcagttctacagcggagtaat |
1670416 |
T |
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| Q |
257 |
ccaacatctcttcttc |
272 |
Q |
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|||||||||||||||| |
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| T |
1670415 |
ccaacatctcttcttc |
1670400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 5996802 - 5996917
Alignment:
| Q |
157 |
tttatataccaagagatccgtatttgctcccccaaaaggatcagcagctacggtaacaaatccgagcgagctcctcctttcagctctggaggagagtaat |
256 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| || |||| |||||||||||||||||||||||||||| |
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| T |
5996802 |
tttacataccaagagatccatatttgctcccccaaaaggatcagcagctgcggaaacaaatccaagtgagcacctcctttcagctctggaggagagtaat |
5996901 |
T |
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| Q |
257 |
ccaacatctcttcttc |
272 |
Q |
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| T |
5996902 |
ccaacatctcttcttc |
5996917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 8403 - 8294
Alignment:
| Q |
162 |
ataccaagagatccgtatttgctcccccaaaaggatcagcagctacggtaacaaatccgagcgagctcctcctttcagctctggaggagagtaatccaac |
261 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||| ||| | |||||| || |||||||||||||||| ||||||| ||||||| ||||| |
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| T |
8403 |
ataccaatagattcgtatttgctcccccaaaaggatcagcagccgcggagaaaaatccaagtgagctcctcctttcagttctggagaagagtaacccaac |
8304 |
T |
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| Q |
262 |
atctcttctt |
271 |
Q |
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|||||||||| |
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| T |
8303 |
atctcttctt |
8294 |
T |
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