View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_high_9 (Length: 263)
Name: NF4779_high_9
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 29207717 - 29207969
Alignment:
| Q |
1 |
attagatgaagatgtaagaataatttttaatttgattttcttgattttaagtatatgataatgtgttttaatatagtttgnnnnnnnngatttcacctca |
100 |
Q |
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| T |
29207717 |
attagatgaagatgtaagaataatttttaatttgattttcttgattttaagtatatgataatgtgttttaatatagtttgaaaaaaaagatttcacctca |
29207816 |
T |
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| Q |
101 |
tgtcatttttctgtcagtcctcttttaccatgatttttctgacaatatctggttaagcagggtgatgaatgcgctagtttaacagaattcggtaattcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207817 |
tgtcatttttctgtcagtcctcttttaccatgatttttctgacaatatctggttaagcagggtgatgaatgcgctagtttaacagaattcggtaattcag |
29207916 |
T |
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| Q |
201 |
ctcttggcgtgcagtactcgtttagtaacttctcatttaaggtaatacctatg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207917 |
ctcttggcgtgcagtactcgtttagtaacttctcatttaaggtaatacctatg |
29207969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 12643880 - 12643716
Alignment:
| Q |
89 |
gatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctgacaatatctggttaagcagggtgatgaatgcgctagtttaacagaat |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12643880 |
gatttcacctcatgtcatttttctgtcagtcctcttttaccatgatttttctgacgatatctggttaagcagggcgatgaatgcgctagtttaacagaat |
12643781 |
T |
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| Q |
189 |
tcggtaattcagctcttggcgtgcagtactcgtttagtaacttctcatttaaggtaatacctatg |
253 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12643780 |
tcagtaattcagctcttggcgtgcagtactcgtttagtaacttctcgtttaaggtaatacctatg |
12643716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12644085 - 12644018
Alignment:
| Q |
1 |
attagatgaagatgtaagaataatttttaatttgattttcttgattttaagtatatgataatgtgttt |
68 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12644085 |
attagatgaagatgtaagaataatttttaattttattttcttgattttaagtatatgataatgtgttt |
12644018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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