View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4779_low_1 (Length: 638)

Name: NF4779_low_1
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4779_low_1
NF4779_low_1
[»] chr5 (3 HSPs)
chr5 (168-412)||(18906729-18906973)
chr5 (18-146)||(18907007-18907135)
chr5 (500-627)||(18906514-18906641)
[»] chr4 (6 HSPs)
chr4 (286-412)||(54580702-54580828)
chr4 (286-412)||(45277726-45277852)
chr4 (512-576)||(54580562-54580626)
chr4 (513-576)||(45277554-45277617)
chr4 (19-137)||(45277954-45278072)
chr4 (328-412)||(46047738-46047822)
[»] chr3 (3 HSPs)
chr3 (19-139)||(12821996-12822116)
chr3 (19-139)||(12827638-12827758)
chr3 (287-398)||(12829064-12829175)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 168 - 412
Target Start/End: Complemental strand, 18906973 - 18906729
Alignment:
Q  168 acttgcaccatgttgtgttgactttttgaaatatattgatattgtaacaattttttgtatgattgattaatcaaatcatatatgatttatttgttatggt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18906973 acttgcaccatgttgtgttgactttttgaaatatattgatattgtttcagttttttgtatgattgattaatcaaatcatgtatgatttatttgttatggt 18906874  T
Q  268 ttttgtttgtgttggagataggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18906873 ttttgtttgtgttggagataggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcattttgttggtattgatatcttcactg 18906774  T
Q  368 gcaaaaaacttgaagatattgttccttcttcccataactgtgatg 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  18906773 gcaaaaaacttgaagatattgttccttcttctcataactgtgatg 18906729  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 18907135 - 18907007
Alignment:
Q  18 agacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattgttatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18907135 agacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattgttata 18907036  T
Q  118 aaaaacagaccctgcaaggtttcttttct 146  Q
    |||||||||||||||||||||||||||||    
T  18907035 aaaaacagaccctgcaaggtttcttttct 18907007  T

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Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 500 - 627
Target Start/End: Complemental strand, 18906641 - 18906514
Alignment:
Q  500 gtgtggttacaacaggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaagattattcacaacttcccttctga 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||    
T  18906641 gtgtggttacaacaggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaagattactcacaacttacctcttga 18906542  T
Q  600 tttcttatttttcgattaacttagtata 627  Q
    ||||||||||||||||||||||| ||||    
T  18906541 tttcttatttttcgattaacttattata 18906514  T

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Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 286 - 412
Target Start/End: Complemental strand, 54580828 - 54580702
Alignment:
Q  286 taggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagata 385  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  54580828 taggttgttgaggtttctacttcaaaaacaggaaagcatggacatgcaaagtgtcactttgttgctattgatatcttcaatgggaaaaaacttgaagata 54580729  T
Q  386 ttgttccttcttcccataactgtgatg 412  Q
    |||||||||| ||||| || |||||||    
T  54580728 ttgttccttcgtcccacaattgtgatg 54580702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 286 - 412
Target Start/End: Complemental strand, 45277852 - 45277726
Alignment:
Q  286 taggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagata 385  Q
    ||||| ||||||||||| || || |||||||||||||| || ||||| || ||||||||||||| |||||| |||||||||  ||| |||||||||||||    
T  45277852 taggttgttgaagtttccacctcgaaaactggaaagcacggtcatgctaaatgtcactttgttgctattgacatcttcacttccaagaaacttgaagata 45277753  T
Q  386 ttgttccttcttcccataactgtgatg 412  Q
    | |||||||| || |||||||||||||    
T  45277752 tcgttccttcctctcataactgtgatg 45277726  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 576
Target Start/End: Complemental strand, 54580626 - 54580562
Alignment:
Q  512 caggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaag 576  Q
    |||||||||||||| ||||| |||||||||||| | ||||||||||| || ||||||||||||||    
T  54580626 caggttcctcatgtgaatcgtactgattatcagttgattgatatctctgaagatggatttgtaag 54580562  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 576
Target Start/End: Complemental strand, 45277617 - 45277554
Alignment:
Q  513 aggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaag 576  Q
    |||||||||| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||    
T  45277617 aggttcctcacgtgaatcgtactgattaccagctcattgatatctctgaagatggatttgtaag 45277554  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 45278072 - 45277954
Alignment:
Q  19 gacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattgttatca 118  Q
    ||||| || ||||| || || ||||| || |||||||| || || || || || || ||||||||||| ||||||||||| || ||  |||| |||||||    
T  45278072 gacgaagagcaccaattcgaatccaaggccgatgctggtgcctccaaaacttaccctcaacaagctggaacaatccgcaagaacggctacatcgttatca 45277973  T
Q  119 aaaacagaccctgcaaggt 137  Q
    ||||| | |||||||||||    
T  45277972 aaaaccgtccctgcaaggt 45277954  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 46047822 - 46047738
Alignment:
Q  328 catgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagatattgttccttcttcccataactgtgatg 412  Q
    ||||| || ||||| |||||||| ||||||||  ||||||   | |||||||||||||| || |||| |||||| ||||||||||    
T  46047822 catgctaaatgtcattttgttgggattgatatggtcactgctgagaaacttgaagatatcgtgcctttttcccacaactgtgatg 46047738  T

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Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 12821996 - 12822116
Alignment:
Q  19 gacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattgttatca 118  Q
    |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || ||||||||||||||| |||| |||||||    
T  12821996 gacgaggaacaccactttgagtcaaaagccgatgccggagcttcaaagacttatcctcaacaagccggaaccatccgcaaaaatggttacatcgttatca 12822095  T
Q  119 aaaacagaccctgcaaggttt 139  Q
    ||||  | |||||||||||||    
T  12822096 aaaatcgtccctgcaaggttt 12822116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 12827638 - 12827758
Alignment:
Q  19 gacgaggaacaccattttgagtccaaagcagatgctggagcatcaaagacatatccacaacaagctggtacaatccgcaaaaatggtcacattgttatca 118  Q
    |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || ||||||||||||||| |||| |||||||    
T  12827638 gacgaggaacaccactttgagtcaaaagccgatgccggagcttcaaagacttatcctcaacaagccggaaccatccgcaaaaatggttacatcgttatca 12827737  T
Q  119 aaaacagaccctgcaaggttt 139  Q
    ||||  | |||||||||||||    
T  12827738 aaaatcgtccctgcaaggttt 12827758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 12829064 - 12829175
Alignment:
Q  287 aggtagttgaagtttcaacttctaaaactggaaagcatggacatgcaaagtgtcactttgttggtattgatatcttcactggcaaaaaacttgaagatat 386  Q
    |||| ||||| ||||||||||| || || || |||||||||||||| ||||| ||||||||||  |||||||| ||||||   ||||| |||||||||||    
T  12829064 aggttgttgaggtttcaacttcaaagaccggtaagcatggacatgctaagtgccactttgttgcaattgatattttcacttctaaaaagcttgaagatat 12829163  T
Q  387 tgttccttcttc 398  Q
    ||| || |||||    
T  12829164 tgtgccctcttc 12829175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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