View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_low_11 (Length: 244)
Name: NF4779_low_11
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_low_11 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 29207492 - 29207718
Alignment:
| Q |
18 |
aattttatttgagtttgattggtttgcgccatatctcttgatttctcacacttgggatccaaccaattttctgcaggctatgttcataccatcggctgaa |
117 |
Q |
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| T |
29207492 |
aattttatttgagtttgattggtttgcgccatatctcttgatttctcacacttgggatccaaccaattttctgcaggctatgttcataccatcggctgaa |
29207591 |
T |
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| Q |
118 |
gctcacgatacaagttatttcatgagccgctacatttggaatgtagaggatgatgaacattgtgctggaggtagtgatttttatgaccattctgaaacat |
217 |
Q |
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| T |
29207592 |
gctcacgatacaagttatttcatgagccgctacatttggaatgtagaggatgatgaacattgtgctggaggtagtgatttttatgaccattctgaaacat |
29207691 |
T |
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| Q |
218 |
ccagcagtggttcaggaagcgattcat |
244 |
Q |
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| T |
29207692 |
ccagcagtggttcaggaagcgattcat |
29207718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 12644309 - 12644084
Alignment:
| Q |
18 |
aattttatttgagtttgattggtttgcgccatatctcttgatttctcacacttgggatccaaccaattttctgcaggctatgttcataccatcggctgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
12644309 |
aattttatttgagtttgattggtttgcgccata-ctcttgatttctcacacttgggatccaaccaatttcctgcaggctatgttcataccatcagctgaa |
12644211 |
T |
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| Q |
118 |
gctcacgatacaagttatttcatgagccgctacatttggaatgtagaggatgatgaacattgtgctggaggtagtgatttttatgaccattctgaaacat |
217 |
Q |
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| T |
12644210 |
gctcacgatacaagttatttcatgagccgctacatttggaatgtagaggatgatgaacattgtgctggaggtagtgatttttatgaccattctgaaacat |
12644111 |
T |
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| Q |
218 |
ccagcagtggttcaggaagcgattcat |
244 |
Q |
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| T |
12644110 |
ccagcagtggttcaggaagcgattcat |
12644084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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