View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_low_12 (Length: 206)
Name: NF4779_low_12
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 40847542 - 40847710
Alignment:
| Q |
17 |
agggggagcaatgggccttcacgacggcttccaggtaacgcggcaaaaggaagatggcgaatcgatgaagcataagacgtgaaagggagaaaaagtatgg |
116 |
Q |
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| T |
40847542 |
agggggagcaatgggccttcacgacggcttccaggtaacgcggcaaaaaga-gatggcgaatcgatgaagcaaaagacgtgaaagggagaaaaagtatgg |
40847640 |
T |
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| Q |
117 |
aggatatggttgagaagaagaggaacggtgaaacattgttaatctcaacagttggtattttactctccac |
186 |
Q |
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| T |
40847641 |
aggataccgttgagaagaagaggaacagtgaaacattgttaatctcaacggttggtattttactctccac |
40847710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 40847222 - 40847125
Alignment:
| Q |
84 |
aagcataagacgtgaaagggagaaaaagtatggaggatatggttgagaagaagaggaacggtgaaacattgttaatctcaacagttggtattttactc |
181 |
Q |
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| T |
40847222 |
aagcatgagacgtgaaagggagaacaagtatgaaggataaggttgagaagaagaggaacggtgaaacattgttaatctcaatcgttgatattttactc |
40847125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 45312704 - 45312615
Alignment:
| Q |
91 |
agacgtgaaagggagaaaaagtatggaggatatggttgagaagaagaggaacggtgaaacattgttaatctcaacagttggtattttact |
180 |
Q |
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| T |
45312704 |
agacgtgaaagggagaaaaagtatggaggatacggttgacaagaagaggaacagtgaaacgttattaatctcaaccgttggtattttact |
45312615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 45313119 - 45313195
Alignment:
| Q |
30 |
ggccttcacgacggcttccaggtaacgcggcaaaaggaagatggcgaatcgatgaagcataagacgtgaaagggaga |
106 |
Q |
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| T |
45313119 |
ggccttcacgacggcttccaggtaacgcgacaaaaggaagatgacgactcaatgaagcagaagacgtgaaagggaga |
45313195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 45313193 - 45313238
Alignment:
| Q |
135 |
agaggaacggtgaaacattgttaatctcaacagttggtattttact |
180 |
Q |
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| T |
45313193 |
agaggaacggtgaaactttgttaatctcaaccgttggtattttact |
45313238 |
T |
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