View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_low_3 (Length: 361)
Name: NF4779_low_3
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 6137888 - 6138223
Alignment:
| Q |
6 |
ctatattattctccaacttggaatcatctactcacgtagctagggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaat |
105 |
Q |
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| T |
6137888 |
ctatattattctccaacttggaatcatctactcacgtag----ggaagttttgtttaaataaatatagggtagaattaaatagaaggtgacaccttcaat |
6137983 |
T |
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| Q |
106 |
tataataatataagatatggttactaattgattgtatataaataaaatcagca--gtgtgtgtgataagaaaacaaataataaagagtgagtggagcatt |
203 |
Q |
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| T |
6137984 |
tataataatataagatatggttactaattgattgtatataaataaaatcagcaatgtgtgtgtgataagaaaacaaataataaagagtgagtggagcatt |
6138083 |
T |
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| Q |
204 |
ataggaaaataaagggtaaggtgtaacatagcttgtgtttgatgatttaagtcacaaagtttagaaatcatttcacgtggattgtaagtgtacaaagcta |
303 |
Q |
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| T |
6138084 |
ataggaaaataaagggtaaggtgtaacatagcttgtgtttgatgatttaagtcacaaagtttagaaatcatttcacgtggattgtaagtgtacaaagcta |
6138183 |
T |
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| Q |
304 |
aggtacctttgatcatgtgacatacagatagagttagaag |
343 |
Q |
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| T |
6138184 |
aggtacctttgatcatgtgacatacagatagagttagaag |
6138223 |
T |
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