View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_low_4 (Length: 360)
Name: NF4779_low_4
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 10842598 - 10842889
Alignment:
| Q |
13 |
catcactaacagatcatccaaacctttcatacaaccatatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaattgg |
112 |
Q |
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| T |
10842598 |
catcactaacagatcatccaaaccttttatacaaccaaatgaagtttagtctgatggaaaacttaatccttcaactcaagttgaggaagttctaaattgg |
10842697 |
T |
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| Q |
113 |
aaatctaaaagtattgtttctcaaaatgatattcttgagaatcgtgacaaaagattatgcagataaattttttaaagtttgtctcnnnnnnntgcaaaaa |
212 |
Q |
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| T |
10842698 |
aaatctaaaagtattgtttctcaaaatgatattcttgagaatcgtgacaaaagattatgcagataaattttttaaagtttgtctcaaaaaaatgcaaaaa |
10842797 |
T |
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| Q |
213 |
cactaccaaaaatctcaaagctcaagtctcccaattggaccatgatttaagtcggatgtcagaagaacaaacttttgacaatgactttaacc |
304 |
Q |
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| T |
10842798 |
cactaccaaaaatctcaaagctcaagtctcccaattggaccatgatttaagtcggatgttagaagaacaaacttttgagaatgactttaacc |
10842889 |
T |
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Back To:
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 12347822 - 12347971
Alignment:
| Q |
14 |
atcactaacagatcatccaaacctttcatacaaccatatgaagtttagtctgatggaaaacttaaaccttcaactcaagttgaggaagttctaaattgga |
113 |
Q |
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||||| ||||||||||||||||| ||||||||||| ||||||| || | ||| ||||||||||||| | ||| |||| ||| || ||| |||||||| |
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| T |
12347822 |
atcacaaacagatcatccaaaccaatcatacaaccaaatgaagtccagccagat-gaaaacttaaaccgttaacccaagctgaagaggttttaaattggc |
12347920 |
T |
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| Q |
114 |
aatctaaaagtattgtttctcaaaatgatattcttgagaatcgtgacaaaa |
164 |
Q |
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| T |
12347921 |
agtctgagaatatggttgctcaaaaggatattctccaaaatcttgacaaaa |
12347971 |
T |
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