View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4779_low_6 (Length: 336)
Name: NF4779_low_6
Description: NF4779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4779_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 31523911 - 31524216
Alignment:
| Q |
19 |
tgtcttgctttcaagcccaggtctaggccatctcatgcctatcatcgagctagctaaacgcttccaaatccaccacaatttcaaactcacaatcctcgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523911 |
tgtcttgctttcaagcccaggtctaggccatctcatgcctatcatcgagctagctaaacgcttccaaatccaccacaatttcaaactcacaatcctcgcc |
31524010 |
T |
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| Q |
119 |
atcacttctcaaacctcacacactgaatctcatattctcaaatcagccaccaacccctcactctacaacatcatccaaatcccatcaccaaacatttcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524011 |
atcacttctcaaacctcacacactgaatctcatattctcaaatcagccaccaacccctcactctacaacatcatccaaatcccatcaccaaacatttcct |
31524110 |
T |
|
| Q |
219 |
ccctcctccccgtctccgccaccgtctgcacccgcatctttctaacaatgcgccactccatacctttcatcaaatccgcactcacaaacttaaccctccc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
31524111 |
ccctcctccccgtctccgccaccgtctgcacccgcatctttctaacaatgcgccattccataccttccatcaaatctgcactcacaaacttaaccctccc |
31524210 |
T |
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| Q |
319 |
tccttc |
324 |
Q |
| |
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|||||| |
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| T |
31524211 |
tccttc |
31524216 |
T |
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