View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-1 (Length: 1030)
Name: NF4780-Insertion-1
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 10 - 858
Target Start/End: Original strand, 40494656 - 40495504
Alignment:
| Q |
10 |
ttgcttatttctcatacttcatagcgttttccttnnnnnnntgctggtaaaaatatgtttaaatgtcgctaaaagttgatagcttttagcggcaattggt |
109 |
Q |
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| T |
40494656 |
ttgcttatttctcatacttcatagcattttccttaaaaaaatgctggtaaaaatatgtttaaatgtcgctaaaagttgatagcttttagcggcaattggt |
40494755 |
T |
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| Q |
110 |
acttcatcagtttaagggcaaattggcaataataatgccggtaaaagttagaaagnnnnnnngcaactatagaagccttacacagtggagcaactaaaga |
209 |
Q |
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| T |
40494756 |
acttcatcagtttaagggcaaattggcaataataatgccggtaaaagttagaaagaaaaaaagcaactacagaagccttacacagtggagcaactaaaga |
40494855 |
T |
|
| Q |
210 |
attcatgtggatattgcatgaattctcccgttgttggagttacgtgatgcgccacattttatttaatatttcctcttttgcggcacttctcgtttcttct |
309 |
Q |
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| T |
40494856 |
attcatgtggatattgcatgaattctcccgttgttggagttacgtgatgcgccacattttatttaatatttcctcttttgcggcatttctcgtttcttcg |
40494955 |
T |
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| Q |
310 |
atcaacttgtgtgctgcctctttagaatgtgcttatgtgctcatagacacttcgggtagtggtgctacaaccatgaaacatgagaaaaataacaatttat |
409 |
Q |
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| T |
40494956 |
atcaacttgtgtgctgcctctttagaatgtgcttatgtgctcatagacactccgggtagtggtgctacaaccatgaaacatgagaaaaataacaatttat |
40495055 |
T |
|
| Q |
410 |
caagttctactgatttttgaatgattctaatttacgagcttcgtcacttctgaaatctcagtgcatttgagaaatattcaactaacttgtatttggatac |
509 |
Q |
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| T |
40495056 |
caagttctactgatttttgaatgattctaatttacgagcttcgtcacttctaaaatctcagtgcacttgagaaatattcgactaacttgtatttggatac |
40495155 |
T |
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| Q |
510 |
atcttactcgcctaaccttctttcgaccaaggaaaactctcttggcgcctgaaatttatctatctactataatctactaatttgtactaacaaaatattt |
609 |
Q |
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| T |
40495156 |
accttactcgcctaaccttctttcgaccaaggaaaactctcttggcgcctgaaatttatctatctactataatctactaatttgtactaacaaattattt |
40495255 |
T |
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| Q |
610 |
aatttttaggtgtatgcaagtagatttttcattatcatggttgggatgtaactttattacattattattaacttagttgtatcgaatgatatgttttttc |
709 |
Q |
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| T |
40495256 |
aatttttaggtgtatgcaagtagatttttcattatcatggttgggatgtaactttattacattattattaacttagttgtatcgaatgatatgttttttc |
40495355 |
T |
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| Q |
710 |
ttttacataatcattattaactaatattaacatatatcatggtgaggtctacattacccactcacgatttggggataatttacccctcatgattttaatc |
809 |
Q |
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| T |
40495356 |
ttttacataatcaatattaactaatattaacatatattatggtgaggtctacattacccactcacgatttggggataatttacccctcatgattttaatc |
40495455 |
T |
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| Q |
810 |
aatcaaattgtaggatatgaaatcaacctcatagtcaaacatgtgagtc |
858 |
Q |
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| T |
40495456 |
aatcaaattgtaggatatgaaatcaacctcatagtcaaacatgtgagtc |
40495504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 933 - 1030
Target Start/End: Original strand, 40495579 - 40495678
Alignment:
| Q |
933 |
catcgtaggacttatatcaactaaaaatt-acgtcaaagtttctttcatccgaattatccttaggaggacatacttttggatcta--ggaaagacataga |
1029 |
Q |
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| T |
40495579 |
catcgtaggacttatatcaactaaaaattaacgtcaaagtttctttcatccgaa-tatccttagaaggacatacttttggatctaaggaaaagacataga |
40495677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 752 - 837
Target Start/End: Original strand, 53497198 - 53497282
Alignment:
| Q |
752 |
tgaggtctacattacccactcacgatttggggataatttacccctcatgattttaatcaatcaaattgtaggatatgaaatcaacc |
837 |
Q |
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| T |
53497198 |
tgaggtctatattacccccttataatttgggg-taatttatccctcatggttttaaacaatcaaattgtaggatataaagtcaacc |
53497282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 821
Target Start/End: Original strand, 8634479 - 8634550
Alignment:
| Q |
750 |
ggtgaggtctacattacccactcacgatttggggataatttacccctcatgattttaatcaatcaaattgta |
821 |
Q |
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| T |
8634479 |
ggtgagatctacattaccctctcttgattaggggataatttacgcttcatgatatcaatcaatcaaaatgta |
8634550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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