View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-10 (Length: 527)
Name: NF4780-Insertion-10
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 525
Target Start/End: Complemental strand, 46686072 - 46685556
Alignment:
| Q |
9 |
gtgcttcctagaaaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaatggcaaagaaaacgataatatgt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
46686072 |
gtgcttcctagaaaacacactagtgatccacaaaggtgtattttgcaaggaaatggttcttgcttaaatcattacaacggcaaagaaaacgaaaatatgt |
46685973 |
T |
|
| Q |
109 |
cttctgaaagaaaaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46685972 |
cttctgaaagaaaaactgaatcgcagagctcctcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagaca |
46685873 |
T |
|
| Q |
209 |
attggggccatcagagaatgaagttcaggctacaaaatatttcggtcggagtaccccgaaaaggacaatgaaagtggagttcaagaacataacgaatcaa |
308 |
Q |
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| T |
46685872 |
attggggccatcagagaatgaagttcaggctacaaaagatttcggtcggagtaccccaaaaaggacaatgaaagtggagttcaagaacataacgaatcaa |
46685773 |
T |
|
| Q |
309 |
cagttaaatcaaaacatgagaaggacaacgatagcgttggggaaatgtccgattgatccatgttcttctggttcaaatcatgaaaaggaagaggaaaatg |
408 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46685772 |
cagttaaatcaaaacatgagaaggacaatgatagcgctggggaaacgtccgattgatccatcttcttctggttcaaatcatgaaaaggaagaggaaaatg |
46685673 |
T |
|
| Q |
409 |
aagatttatgtcagagtatcccacaaaggaaaaggaaagtagtttttgattatcgattccactgcttgataatctttattccattattatatgttagttt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46685672 |
cagatttatgtcagagtatcccacaaaggaaaaggaaagtagtttttgattgtcgattccactgcttgataatctttattccattattatatgttagttt |
46685573 |
T |
|
| Q |
509 |
ttaactttcttcattaa |
525 |
Q |
| |
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||||||||||||||||| |
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| T |
46685572 |
ttaactttcttcattaa |
46685556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 371 - 524
Target Start/End: Complemental strand, 46703734 - 46703579
Alignment:
| Q |
371 |
ttcttctggttcaaatcatgaaaaggaagaggaaaatgaagatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattatcgattcc |
468 |
Q |
| |
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||||||||||||| | |||| |||||||||||||| | ||||| ||||||||||||| ||||||| |||||||| |||| ||||| ||||||||| |
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| T |
46703734 |
ttcttctggttcagaacatgtaaaggaagaggaaagagctgatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcc |
46703635 |
T |
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| Q |
469 |
actgcttgataatctttattccattattatatgttagtttttaactttcttcatta |
524 |
Q |
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| T |
46703634 |
tctgctctataatccttattccattattatatgttagtttttaactttcttcatta |
46703579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 524
Target Start/End: Complemental strand, 46677148 - 46677023
Alignment:
| Q |
407 |
tgaagatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattatcgattccactgcttgataatctttattccatta------ttat |
498 |
Q |
| |
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||||||||| |||||||||| ||| ||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
46677148 |
tgaagatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattat |
46677049 |
T |
|
| Q |
499 |
atgttagtttttaactttcttcatta |
524 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
46677048 |
accttagtttttaactttcttcatta |
46677023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 523
Target Start/End: Complemental strand, 21728345 - 21728227
Alignment:
| Q |
407 |
tgaagatttatgtcagagtatcccacaaaggaaaaggaaa--gtagtttttgattatcgattccactgcttgataatctttattccattattatatgtta |
504 |
Q |
| |
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||||||||||||||||| | ||| ||||||| || ||| |||||| |||||||| ||||| || ||| ||||||||||||||||||||| |||||| |
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| T |
21728345 |
tgaagatttatgtcagactgcccccaaaaggaagagaaaatggtagttattgattattgattcttcttctttataatctttattccattattacatgtta |
21728246 |
T |
|
| Q |
505 |
gtttttaactttcttcatt |
523 |
Q |
| |
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||||||||||||||||||| |
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| T |
21728245 |
gtttttaactttcttcatt |
21728227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 21245144 - 21245232
Alignment:
| Q |
141 |
tcttctttgcatctctctgcaaggcaagggcattgcctatcactggtcccttcacaaatggaaagacaattggggccatcagagaatga |
229 |
Q |
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|||||||||||||| ||| |||||||||| |||| |||||| | |||||||| || ||| |||| ||| ||| |||||| |||||||| |
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| T |
21245144 |
tcttctttgcatctttcttcaaggcaaggacattccctatcgcaggtccctttaccaatcgaaaaacatttgtcgccatctgagaatga |
21245232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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