View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780-Insertion-12 (Length: 480)

Name: NF4780-Insertion-12
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780-Insertion-12
NF4780-Insertion-12
[»] scaffold0470 (2 HSPs)
scaffold0470 (6-480)||(7045-7522)
scaffold0470 (414-473)||(9444-9503)
[»] chr8 (12 HSPs)
chr8 (6-480)||(6617727-6618204)
chr8 (9-480)||(6592036-6592492)
chr8 (9-232)||(6791962-6792185)
chr8 (279-480)||(6791729-6791929)
chr8 (309-480)||(6650067-6650237)
chr8 (309-480)||(6730433-6730603)
chr8 (279-450)||(6804742-6804910)
chr8 (120-229)||(6804962-6805071)
chr8 (414-473)||(6620122-6620181)
chr8 (154-222)||(6594927-6594995)
chr8 (414-473)||(6594447-6594505)
chr8 (414-473)||(6793952-6794011)
[»] scaffold0514 (4 HSPs)
scaffold0514 (9-232)||(4438-4661)
scaffold0514 (279-480)||(4694-4894)
scaffold0514 (414-473)||(2443-2502)
scaffold0514 (177-222)||(2010-2055)


Alignment Details
Target: scaffold0470 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Complemental strand, 7522 - 7045
Alignment:
Q  6 caaaaaggtctaacgacacagcttattacctatttgccatcaattcaagtgtagataacggttgagtgtgatacatattaa----agaaggaacagacta 101  Q
    ||||||| ||||||| |||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    |||||||||||||||    
T  7522 caaaaagatctaacggcacagcttgttacctatttgtcatcaattcaagtgtaaataacggtcgagtgtgatacatattaattaaagaaggaacagacta 7423  T
Q  102 tataaagtagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7422 tataaagtagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggctgttaaa 7323  T
Q  202 ggtaagatttttcattaaatttggttttaccnnnnnnnnttaattgaaatttggagnnnnnnnnnnnnnnnnnnnnnagttaggagatttgaacgaagat 301  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||                     |||||||||||||||||||||||    
T  7322 ggtaagatttttcattaaatttggttttaccaaaaaaaattaattgaaatttggagtttttgaaattttatttttttagttaggagatttgaacgaagat 7223  T
Q  302 gattaaaatcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattatttaacatatctcaatagggataaaaa 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7222 gattaaaatcctatgatgcagttggattttagttctctattttttgggttagaa-tgtgtagtttttaaattatttaacatatctcaatagggataaaaa 7124  T
Q  402 tagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagcca 480  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7123 tagattggcacatttctatatctttttagaggcactgctttccatgaaagtaattctacaattttaatagttcgagcca 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 9503 - 9444
Alignment:
Q  414 tttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagtt 473  Q
    ||||||||||| |||| ||||||| ||||  |||||||||||||||||||||||||||||    
T  9503 tttctatatctatgtaaaggcactacttttgatgaaagtaattcgacaattttaatagtt 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Complemental strand, 6618204 - 6617727
Alignment:
Q  6 caaaaaggtctaacgacacagcttattacctatttgccatcaattcaagtgtagataacggttgagtgtgatacatattaa----agaaggaacagacta 101  Q
    ||||||| ||||||| |||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    |||||||||||||||    
T  6618204 caaaaagatctaacggcacagcttgttacctatttgtcatcaattcaagtgtaaataacggtcgagtgtgatacatattaattaaagaaggaacagacta 6618105  T
Q  102 tataaagtagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6618104 tataaagtagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcggttaaa 6618005  T
Q  202 ggtaagatttttcattaaatttggttttaccnnnnnnnnttaattgaaatttggagnnnnnnnnnnnnnnnnnnnnnagttaggagatttgaacgaagat 301  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||                     |||||||||||||||||||||||    
T  6618004 ggtaagatttttcattaaatttggttttaccaaaaaaaattaattgaaatttggagtttttgaaattttatttttttagttaggagatttgaacgaagat 6617905  T
Q  302 gattaaaatcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattatttaacatatctcaatagggataaaaa 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6617904 gattaaaatcctatgatgcagttggattttagttctctattttttgggttagaa-tgtgtagtttttaaattatttaacatatctcaatagggataaaaa 6617806  T
Q  402 tagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagcca 480  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6617805 tagattggcacatttctatatctttttagaggcactgctttccatgaaagtaattctacaattttaatagttcgagcca 6617727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 6592492 - 6592036
Alignment:
Q  9 aaaggtctaacgacacagcttattacctatttgccatcaattcaagtgtagataacggttgagtgtgatacatattaaagaaggaacagactatataaag 108  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  6592492 aaaggtctagcggcacagcttattacctatttgtcatcaattcaagtgttaataacggtcgagtgtgatacatattaaagaaggaaaagactatataaag 6592393  T
Q  109 tagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaaga 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592392 tagcatcactatactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaaga 6592293  T
Q  209 tttttcattaaatttggttttaccnnnnnnnnttaattgaaatttggagnnnnnnnnnnnnnnnnnnnnnagttaggagatttgaacgaagatgattaaa 308  Q
    ||||||||||||||||||||||||        |||||||||||||||||                     ||||||||||||||||||||||||||||||    
T  6592292 tttttcattaaatttggttttaccaaaaaaaattaattgaaatttggagtttttgaaattttatttttttagttaggagatttgaacgaagatgattaaa 6592193  T
Q  309 atcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattg 408  Q
    |||||||||||||||||||              |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6592192 atcctatgatgcagttgga--------------tttttgggttag-aatgtgtaatttttaaattatttaacatatctcaatagggataaaaatagattg 6592108  T
Q  409 gcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagcca 480  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6592107 gcacatttctatatctttgtagaggcactgctttccataaaagtaattcgacaattttaatagtttgagcca 6592036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 6792185 - 6791962
Alignment:
Q  9 aaaggtctaacgacacagcttattacctatttgccatcaattcaagtgtagataacggttgagtgtgatacatattaaagaaggaacagactatataaag 108  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||    
T  6792185 aaagatctagcggcacagcttattacctatttgccatcaattcaagtgtaaataatgatcgagtgtgatacatattaaagaaggaacagactatataaag 6792086  T
Q  109 tagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6792085 tagcatcactacactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaaga 6791986  T
Q  209 tttttcattaaatttggttttacc 232  Q
    |||||||| |||||||||||||||    
T  6791985 tttttcatgaaatttggttttacc 6791962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 279 - 480
Target Start/End: Complemental strand, 6791929 - 6791729
Alignment:
Q  279 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattattta 378  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  6791929 agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaa-tgtgtagtttttaaattattta 6791831  T
Q  379 acatatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagc 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6791830 acatatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagc 6791731  T
Q  479 ca 480  Q
    ||    
T  6791730 ca 6791729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 309 - 480
Target Start/End: Complemental strand, 6650237 - 6650067
Alignment:
Q  309 atcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6650237 atcctatgatgcagttggattttagttctctattttttgggttagaa-tgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattg 6650139  T
Q  409 gcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagcca 480  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6650138 gcacatttttatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaataattcgagcca 6650067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 309 - 480
Target Start/End: Complemental strand, 6730603 - 6730433
Alignment:
Q  309 atcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6730603 atcctatgatgcagttggattttagttctctattttttgggttagaa-tgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattg 6730505  T
Q  409 gcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagcca 480  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6730504 gcacatttttatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaataattcgagcca 6730433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 279 - 450
Target Start/End: Complemental strand, 6804910 - 6804742
Alignment:
Q  279 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattattta 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||    
T  6804910 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttgaattttaggtctctattttttgggttag-aatgtgtagtttttaaattagtta 6804812  T
Q  379 acatatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttccatgaaa 450  Q
    ||  |||||||| ||||||||| ||| ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  6804811 ac--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgcaatgctttccatgaaa 6804742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 6805071 - 6804962
Alignment:
Q  120 cactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaagatttttcattaa 219  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||     
T  6805071 cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttgagaggcagttaaaagtaagatttttcattat 6804972  T
Q  220 atttggtttt 229  Q
    |||| |||||    
T  6804971 attttgtttt 6804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 6620181 - 6620122
Alignment:
Q  414 tttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagtt 473  Q
    ||||||||||| |||| ||||||| ||||  |||||||||||||||||||||||||||||    
T  6620181 tttctatatctatgtaaaggcactacttttgatgaaagtaattcgacaattttaatagtt 6620122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 6594995 - 6594927
Alignment:
Q  154 tataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaagatttttcattaaatt 222  Q
    ||||| ||||||||| | ||| |||||||| ||||||| |  |||||||||||||||||||||||||||    
T  6594995 tatacaaattgtgaaatgtttgaaatacacagttgagaagttgttaaaggtaagatttttcattaaatt 6594927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 6594505 - 6594447
Alignment:
Q  414 tttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagtt 473  Q
    ||||||||||| |||| ||||||| ||||  |||||||||||||||||||||||||||||    
T  6594505 tttctatatctatgtaaaggcactactttg-atgaaagtaattcgacaattttaatagtt 6594447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 6794011 - 6793952
Alignment:
Q  414 tttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagtt 473  Q
    ||||||||||| |||| ||||||| ||||  || |||||||||||| |||||||||||||    
T  6794011 tttctatatctatgtaaaggcactacttttgattaaagtaattcgataattttaatagtt 6793952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 4438 - 4661
Alignment:
Q  9 aaaggtctaacgacacagcttattacctatttgccatcaattcaagtgtagataacggttgagtgtgatacatattaaagaaggaacagactatataaag 108  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||    
T  4438 aaagatctagcggcacagcttattacctatttgccatcaattcaagtgtaaataatgatcgagtgtgatacatattaaagaaggaacagactatataaag 4537  T
Q  109 tagcatcactacactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4538 tagcatcactacactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaaga 4637  T
Q  209 tttttcattaaatttggttttacc 232  Q
    |||||||| |||||||||||||||    
T  4638 tttttcatgaaatttggttttacc 4661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 279 - 480
Target Start/End: Original strand, 4694 - 4894
Alignment:
Q  279 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaaatgtgtagtttttaaattattta 378  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  4694 agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaa-tgtgtagtttttaaattattta 4792  T
Q  379 acatatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagc 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4793 acatatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagttcgagc 4892  T
Q  479 ca 480  Q
    ||    
T  4893 ca 4894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 2443 - 2502
Alignment:
Q  414 tttctatatctttgtagaggcactgctttccatgaaagtaattcgacaattttaatagtt 473  Q
    ||||||||||| | || |||||||  |||  |||||||||||||||||||||||||||||    
T  2443 tttctatatctatttaaaggcactatttttgatgaaagtaattcgacaattttaatagtt 2502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 2010 - 2055
Alignment:
Q  177 aatacacggttgagaggcagttaaaggtaagatttttcattaaatt 222  Q
    ||||||| ||||||| |  |||||||||||||||||||||||||||    
T  2010 aatacacagttgagaagttgttaaaggtaagatttttcattaaatt 2055  T

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