View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-14 (Length: 463)
Name: NF4780-Insertion-14
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 30514438 - 30514038
Alignment:
| Q |
8 |
actaaaataataatccctttactttactttactttagtatata--aaataaagtaatgtgattttgtcctaattaatcgtaacaaacatatataaataat |
105 |
Q |
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| T |
30514438 |
actaaaataataatccctttactttactttactttagtatatataaaataaagtaatgtgattttgtcctaattaatcgtaacaaacatatataaataat |
30514339 |
T |
|
| Q |
106 |
gtgtgacgaggaagataacagtgagtttgatcagagatccaatgaatttggttcagagaagcattgggacaaaaattgaatgccnnnnnnnacaagttat |
205 |
Q |
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| T |
30514338 |
gtgtgacgaggaagataacggtgagtttgatcagagatccaatgaatttggttcagagaagcattgggacaaaaattgaatgcctttttttacaagttat |
30514239 |
T |
|
| Q |
206 |
taggattgtacgatcttttcagaggttcactagcacttctaccaaacagtaaccacaagatttaagggcaacaaacaacgtagtaactgtaccactttct |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30514238 |
taggattgtacgatcttttcagaggttcactagcacttctaccaaacagtaaccacaagatttaagggcaacaaacaacgtagtaactgtacctgtttct |
30514139 |
T |
|
| Q |
306 |
gttcatatattcttttcaaaaatccttagcttttcttgtttttacacaactgttccttctgccactaaaaaatataacactagcagttctttctactttt |
405 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30514138 |
gttcatatattcttttcaaaaatccttaccttttcttgtttttacaccactgttccttctgccactaaaaaatataacactagcagttctttctactttt |
30514039 |
T |
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| Q |
406 |
g |
406 |
Q |
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| T |
30514038 |
g |
30514038 |
T |
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