View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-15 (Length: 414)
Name: NF4780-Insertion-15
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 34367560 - 34367970
Alignment:
| Q |
8 |
gttttcagatcaaacactctactctagccctagaacaaggaacattgtgaatgcttatgcaatgaaccaagccatgttcttcctagattttcaacaagct |
107 |
Q |
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| T |
34367560 |
gttttcagatcaaacactctactctagccctagaacaaggaacattgtgaatgcttatgcaatgaaccaagccatgttcttcctagattttcaacaagct |
34367659 |
T |
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| Q |
108 |
atggtgaagatgggtttgcttgatattaaacaaggttccaatggtgaagtgagagcaaattgccgcaaaataaactaatcattttgttatggttttgtaa |
207 |
Q |
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| T |
34367660 |
atggtgaagatgggtttgcttgatattaaacaaggttccaatggtgaagtgagatcaaattgccgcaaaataaactaatcattttgttatggttttgtaa |
34367759 |
T |
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| Q |
208 |
ttttgaaaactcaaactcttcaagcttgttattagttagctaaaaataatattataagcatgtgatatatataatgtaaactaaac--nnnnnnnnnnnn |
305 |
Q |
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| T |
34367760 |
ttttgaaaactcaaactcttcaagcttgttattagttagctaaaaataatattataagcatgtgatatatataatgtaaactaaacgtgtgtgtgtgtgt |
34367859 |
T |
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| Q |
306 |
attgtttgctctaaattgtttatgttgggtgggaagtattttctgtaatattatagtggtaatatttcttatca--atatattataagcatcacatattg |
403 |
Q |
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| T |
34367860 |
attgtttgctctaaattgtttatgttgggtgggaagtattttctgtaatattatagtggtaatatttcttatcaatatatattataagcatcacatattg |
34367959 |
T |
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| Q |
404 |
gctgtttttca |
414 |
Q |
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| T |
34367960 |
gctgtgtttca |
34367970 |
T |
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