View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780-Insertion-24 (Length: 128)
Name: NF4780-Insertion-24
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-24 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 23586630 - 23586510
Alignment:
| Q |
8 |
catagcaacctgagtcttaggggcgtcaccgatcaaacgttctgtatcagggaaagcaacataagaaggtgtagttctattaccctgatcatttgctatg |
107 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23586630 |
catagcaacctgattcttagcagcatcaccgatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatg |
23586531 |
T |
|
| Q |
108 |
atttcaacacgatcgtgttgc |
128 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
23586530 |
atttcaacacgatcatgttgc |
23586510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 23595463 - 23595343
Alignment:
| Q |
8 |
catagcaacctgagtcttaggggcgtcaccgatcaaacgttctgtatcagggaaagcaacataagaaggtgtagttctattaccctgatcatttgctatg |
107 |
Q |
| |
|
||||||||| ||| |||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23595463 |
catagcaacttgattcttggctgcatcaccgatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatg |
23595364 |
T |
|
| Q |
108 |
atttcaacacgatcgtgttgc |
128 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
23595363 |
atttcaacacgatcatgttgc |
23595343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 8104063 - 8104179
Alignment:
| Q |
12 |
gcaacctgagtcttaggggcgtcaccgatcaaacgttctgtatcagggaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgattt |
111 |
Q |
| |
|
||||||||| |||||| || ||||||||||| | ||| |||||| ||||||||||||||| ||||| ||||| || || |||||||| || ||||| | |
|
|
| T |
8104063 |
gcaacctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcattagcaatgatct |
8104162 |
T |
|
| Q |
112 |
caacacgatcgtgttgc |
128 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8104163 |
caacacgatcgtgttgc |
8104179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 8016397 - 8016281
Alignment:
| Q |
12 |
gcaacctgagtcttaggggcgtcaccgatcaaacgttctgtatcagggaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgattt |
111 |
Q |
| |
|
||||||||| |||||| || ||||||||||| | ||| |||||| ||||||||||||||| || || |||| || || |||||||| || ||||| | |
|
|
| T |
8016397 |
gcaacctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcattagcaatgatct |
8016298 |
T |
|
| Q |
112 |
caacacgatcgtgttgc |
128 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8016297 |
caacacgatcgtgttgc |
8016281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 10493058 - 10493017
Alignment:
| Q |
59 |
gaaagcaacataagaaggtgtagttctattaccctgatcatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
10493058 |
gaaagcaacaaaagaaggtgtagttctatttccttgatcatt |
10493017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 13332207 - 13332166
Alignment:
| Q |
59 |
gaaagcaacataagaaggtgtagttctattaccctgatcatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
13332207 |
gaaagcaacaaaagaaggtgtagttctatttccttgatcatt |
13332166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 8655388 - 8655435
Alignment:
| Q |
53 |
atcagggaaagcaacataagaaggtgtagttctattaccctgatcatt |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
8655388 |
atcagtgaaagcaacaacagaaggtgtagttctattgccttgatcatt |
8655435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University