View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-3 (Length: 1020)
Name: NF4780-Insertion-3
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 10 - 643
Target Start/End: Complemental strand, 16181669 - 16181036
Alignment:
| Q |
10 |
acctaagtttggttaaggtagagcaagataccagattgcaggcattgaaccaatcctgattacatattgccctgtccagcctcctttgaatattaaactt |
109 |
Q |
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| T |
16181669 |
acctaagtttggttaaggtagagcaagataccagattgcaggcattgaaccaatcctgattacatattgccctgtccagcctcctttgaatattaaacct |
16181570 |
T |
|
| Q |
110 |
gcctctcctacaatttaaccaggtataatccgcacctctagtgtgaatatggattagattattactatcagtccagttttggaaatcctgcatagcaact |
209 |
Q |
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| T |
16181569 |
gcctctcctaccatttaaccaggtataatccgcacctctagtgtgaatatggatcagattattactatcagtccagttttggaaatcctgcatagcaact |
16181470 |
T |
|
| Q |
210 |
tgtgatggtctaaagttacttctctgctcatgtgcaccaagaatggtgttaaaatcacccatacagcaccaagggagattcatagtatcttggatatttt |
309 |
Q |
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| T |
16181469 |
tgtgatggtctatagttacttctctgctcatgtgcaccaagaatggtgttaaaatcacccatacagcaccaagggagattgatagtatcttggatatttt |
16181370 |
T |
|
| Q |
310 |
tcagagtatcccacaattgtcttcttttaattaaacaatttgaagcataaacaccagtgatcccaaaaaatttaccattcaaatcaactagcaaagtgat |
409 |
Q |
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| T |
16181369 |
tcagagtatcccacaattgtcttcttttagttaaacaatttgaagcataaacaccagtgatcccaaaaaatttaccattcaaatcaactagcaaagtgat |
16181270 |
T |
|
| Q |
410 |
ttgttgatcatttgaacatataagaacagggttgatatttttagaacagaaacaccaaatggttggcagtaaggtacctctattattaacacataacaat |
509 |
Q |
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| T |
16181269 |
ttgttgatcatttgaacatataagaacatggttgatatttttagaacagaaacaccaaatgtttggcagtaaggtacctctattattaacacataacaat |
16181170 |
T |
|
| Q |
510 |
ttcattccttgtttatctagccaactcatagaaaacttggctatattcatccaaggttcagaaatnnnnnnnntgtttggtttatgcaacttcaaaagtt |
609 |
Q |
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| T |
16181169 |
ttcattccttgtttatctagccaactcatagaaaacttggctatattcatccaaggttcagaaataaaacaaatgtttggtttatgcaacttcaaaagtt |
16181070 |
T |
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| Q |
610 |
tcttaagagctaactttgttatgttccccttaag |
643 |
Q |
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| T |
16181069 |
tcttaagatctaactttgttatgttccccttaag |
16181036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 686 - 1020
Target Start/End: Complemental strand, 16180993 - 16180659
Alignment:
| Q |
686 |
gactcttcatttcaaaggtgatgaggaccaacttttgatctggtagagtaggtacttttcaaaagagtagttttcttagccttctttgtgcctttagaga |
785 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16180993 |
gactcttcatttcaaaggtgatgaggaccaacttttgatctggtagagtaggtacttttcaaaagagcagttttcttagccttctttgtgcctttagaga |
16180894 |
T |
|
| Q |
786 |
tgacttgttggaagccttcatcatccatctggttcatttgatcaattggtgactgatttggttggaaactgttagcttgggaagcaggaaatctgtcagc |
885 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16180893 |
tgactttttggaagccttcatcatccatctagttcatttgatcaattggtgactgatttggttggaaactgttagcttgggaagcaggaaatctgtcagc |
16180794 |
T |
|
| Q |
886 |
aggttcatcagccggcaactcttgtagattaacccaagcaactttaagaaaatcaatatcattatgtgcaagattagcttttgatggcacactatccata |
985 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16180793 |
aggttcatcagccggcaactcttgtagattaacccaagcaactttaagaaaatcaatatcattatgtgcaagattagcttttgatggcacactattcata |
16180694 |
T |
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| Q |
986 |
cttttcatagggctcctctgaacatcctaaatctg |
1020 |
Q |
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||||||||||||||| ||||||||||||| |||| |
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| T |
16180693 |
cttttcatagggctctcctgaacatcctaattctg |
16180659 |
T |
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Back To:
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