View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780-Insertion-4 (Length: 1010)
Name: NF4780-Insertion-4
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-4 |
 | |
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| [»] chr6 (4 HSPs) |
| |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 611 - 1010
Target Start/End: Complemental strand, 33633757 - 33633351
Alignment:
| Q |
611 |
aagtagcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataaccaaacagatgcagagttg |
710 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
33633757 |
aagtagcttaaatatcgagtgctccatatgcttgaaaattcggttgtttctttcaccctaaattacttaaacaccagataaccaaacagatgcagagttg |
33633658 |
T |
|
| Q |
711 |
accgtta-atgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgatagctggactcacataaacgacactcagccattgc-aaa |
808 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |
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|
| T |
33633657 |
accatttgatgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgataactggactcacaaaaacgacactcaaccattgcaaaa |
33633558 |
T |
|
| Q |
809 |
ctagatgccagattgatccaaagaaattacaatgcactaactgatgattgatatcttcattagctccataaccacccacac-aagaaagttgctaatttt |
907 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33633557 |
ccagatgccagattgatctaaagaaattacaatgcactaactgatgattgatatcttcattagctccataaccacccacacaaagaaagttgctaatttt |
33633458 |
T |
|
| Q |
908 |
gaagtataaaccaggccgtagaagattatctttagtagggatgcgattctc-aggagacgtc-agcaaa-atgttgatcttggaaggaa-ctccttatgt |
1003 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||||| || ||||||| |||||| ||||||||||||||||||| | || ||||| |
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|
| T |
33633457 |
gaagtataaaccaggccgcataagattatctttagtagggatgtgattctcaagaagacgtcaagcaaagatgttgatcttggaaggaaccaccatatgt |
33633358 |
T |
|
| Q |
1004 |
caaatga |
1010 |
Q |
| |
|
||||||| |
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|
| T |
33633357 |
caaatga |
33633351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 342 - 613
Target Start/End: Complemental strand, 33634086 - 33633807
Alignment:
| Q |
342 |
tgttctcaaatgtttgttttcgaacacagtaggctacaaatattcaaacacggaaataattgaagtattttttgtcagaagctagaataatattagatta |
441 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |
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|
| T |
33634086 |
tgttctcaagtgtttgtttt-gaacacaataggctacaaatattcaaacacggaaataattgaagtatttttttt-agaagctagaataatattatatta |
33633989 |
T |
|
| Q |
442 |
ccaaatagtttaga-------ctttccagcacatgatgtgcaagaaaataagattaagttaagaaggaacaaagtctaaaaaggaaccaaaatgagagaa |
534 |
Q |
| |
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||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
33633988 |
ccacagagtttagagtttagactttccagcacatgatgtgcaagaaaataagattaagttaataaattacaaagtctaaaaagggaccaaaatgagagaa |
33633889 |
T |
|
| Q |
535 |
attaagatacaaa---ttaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaag |
613 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
33633888 |
attaagatacaaatttttaagtaataactttcaaacattattttggattaagcccatcaaaaatggtaatcaaaagagaaag |
33633807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 33634414 - 33634247
Alignment:
| Q |
7 |
agaaaataatggtttgcccttcaattttttattccaccacattaattgcctttctatatcatccatctactgcatattcatagcgcctggtccatttata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
33634414 |
agaaaataatggtttgcccttcaattttatattccaccacattaattgcttttctatatcatccatccactgcatatttatagcgcctggtccatttata |
33634315 |
T |
|
| Q |
107 |
tctctagcggcatgtgtacatgattgagagaatgatgtagaactatggaagaagatgatgcaagcacg |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33634314 |
tctctagcggcatgtgtacatgattgagagaatgatgtagaactatggaagaagatgatgcaagcacg |
33634247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 549 - 613
Target Start/End: Complemental strand, 12525457 - 12525394
Alignment:
| Q |
549 |
taagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaag |
613 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
12525457 |
taagtaataacttacaagcataattttggattaag-tcatcaaaaatggtaatcaaaagagaaag |
12525394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 101; Significance: 2e-49; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 617 - 870
Target Start/End: Complemental strand, 91341 - 91085
Alignment:
| Q |
617 |
cttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataaccaaac-agatgcagagttgaccgt |
715 |
Q |
| |
|
||||||||||||||| | |||||| || ||||| |||||||||| |||||| ||||||| ||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
91341 |
cttaaataaagagtgcttcttatgcttaaaaatctggttgtttctatcactccaaattacacaaacacaagataatcaaaagagatgcagagttgacagg |
91242 |
T |
|
| Q |
716 |
taatgtttagaaaatcctcctaaatgatcaaattgacat-aaatgatcggtaatgatagctggactcacataaacgacactcagccattgc-aaactaga |
813 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| | ||||||| ||| |||||||| | ||||||| |||| | | |
|
|
| T |
91241 |
tgatgtttagaaaatcctcataaatgaccaaattgacataaaatgatcggtaatgattgttggactcgcatgaacgacacctaaccattgcaaaacaata |
91142 |
T |
|
| Q |
814 |
tgccagattgatccaaagaaattacaatgcactaactgatgattgatatcttcatta |
870 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
91141 |
tgccaaattaatccaaaaaaattacaatgcaaaaagagatgattgatatcttcatta |
91085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 585 - 617
Target Start/End: Complemental strand, 91425 - 91393
Alignment:
| Q |
585 |
ccaccaagaatggtaatcaaaagagaaagtagc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
91425 |
ccaccaagaatggtaatcaaaagagaaagtagc |
91393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 617 - 789
Target Start/End: Complemental strand, 33542445 - 33542272
Alignment:
| Q |
617 |
cttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttgaccgt |
715 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
33542445 |
cttaaataaagagtgttccttatgcttgaaaattgaattgtttctttcactccaaattacttaaacacaagataaccaaaagagatgccgagttgaccac |
33542346 |
T |
|
| Q |
716 |
taatgtttagaaaatcctcctaaatgatcaaattgacataaatgatcggtaatgatagctggactcacataaac |
789 |
Q |
| |
|
| ||||||| |||||||| |||| ||| | |||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33542345 |
tgatgtttaaaaaatccttctaattgaccgaattgatgtaactgatcggtaatgatagctggactcacataaac |
33542272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 539 - 617
Target Start/End: Complemental strand, 33542573 - 33542496
Alignment:
| Q |
539 |
agatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtagc |
617 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
33542573 |
agatacaaattaagtaattgctttcaagaataattttggattaag-ccactaagaatggtaattaaaagagaaagtagc |
33542496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 611 - 721
Target Start/End: Complemental strand, 1300849 - 1300739
Alignment:
| Q |
611 |
aagtagcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagtt |
709 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||| ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
1300849 |
aagtagcttaaataaagagtg-tccttatacttgaaaattcggctgtttctttcactccaaattactcaaacataagataaccaaaagagatgcagagtt |
1300751 |
T |
|
| Q |
710 |
gaccgttaatgt |
721 |
Q |
| |
|
||||| |||||| |
|
|
| T |
1300750 |
gaccgctaatgt |
1300739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 538 - 616
Target Start/End: Complemental strand, 1300973 - 1300896
Alignment:
| Q |
538 |
aagatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtag |
616 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1300973 |
aagatacaaactaagtaatagctttcaagcataagtttggattaagcc-accaagaatggtaatcaaaagagaaagtag |
1300896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 619 - 721
Target Start/End: Original strand, 1049192 - 1049295
Alignment:
| Q |
619 |
taaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataac-caaacagatgcagagttgaccgtta |
717 |
Q |
| |
|
|||||||| |||| | ||||| ||| |||||||||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1049192 |
taaataaatagtgcttcttatatttaaaaattcggttgtttcttacactccaaattacccaaacacaagataactaaaagagatgcagagttgaccgttg |
1049291 |
T |
|
| Q |
718 |
atgt |
721 |
Q |
| |
|
|||| |
|
|
| T |
1049292 |
atgt |
1049295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 615 - 714
Target Start/End: Original strand, 1076074 - 1076169
Alignment:
| Q |
615 |
agcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttgacc |
713 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||| | ||||| |||||||||||||| ||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
1076074 |
agcttaaataaagagtg----tcatgattgaaaattcggctatttctgtcactctaaattac-caaacacaagataaccaaaagagatgcaaagttgacc |
1076168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 616
Target Start/End: Original strand, 1075949 - 1076023
Alignment:
| Q |
541 |
atacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaagtag |
616 |
Q |
| |
|
||||||| ||||||||| |||| || ||| | |||||||||| || ||||| ||||||||||||||||||| |||| |
|
|
| T |
1075949 |
atacaaactaagtaatagctttaaagcataagtttggattaaacc-accaaaaatggtaatcaaaagagaaggtag |
1076023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 616 - 785
Target Start/End: Original strand, 34051485 - 34051658
Alignment:
| Q |
616 |
gcttaaataaagagtgatccttatgtttgaaaattcggttgtttctttcactctaaattacttaaacacaagataacc-aaacagatgcagagttga--- |
711 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||| || ||| |||||||||| ||| ||| | ||||||| |
|
|
| T |
34051485 |
gcttaaataaagagtgatccgtatgcttgaaaatttggttgtttctttccctctaaagtatccaaatgcaagataaccaaaagagaagttgagttgactg |
34051584 |
T |
|
| Q |
712 |
ccgttaatgtttagaaaatcctcctaaatgatc-aaattgacataaatgatcggtaatgatagctggactcacat |
785 |
Q |
| |
|
| | | ||||||||||||| ||||||||| ||| ||| |||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
34051585 |
ctgctgatgtttagaaaattctcctaaat-atctaaactgacgtaaatgatcgataatgatagctggacacacat |
34051658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 408 - 614
Target Start/End: Original strand, 34051227 - 34051431
Alignment:
| Q |
408 |
attttttgtcagaagctagaataatattagattaccaaatagtttagactttccagcacatgatgtgc-aagaaaataagattaagttaagaaggaacaa |
506 |
Q |
| |
|
||||||| | |||||||| ||| |||||||||||||||| || |||||||| |||||| ||||||| || |||| | || ||||| || ||| ||| |
|
|
| T |
34051227 |
attttttttaagaagctaaaattatattagattaccaaagagcctagactttttagcacaagatgtgccaaaaaaagaggactaagtcaaaaagttgcaa |
34051326 |
T |
|
| Q |
507 |
agtctaaaaaggaaccaaaatgagagaaattaagatacaaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaa |
606 |
Q |
| |
|
||| ||||||| |||| || |||| | | |||||||||| | || |||||||||||| ||| ||||||||||||| | ||||||||| ||||||| || |
|
|
| T |
34051327 |
agtgcaaaaagggaccataaggagaaaga--aagatacaaaatgagcaataactttcaagcataattttggattaag-ctaccaagaatagtaatcagaa |
34051423 |
T |
|
| Q |
607 |
gagaaagt |
614 |
Q |
| |
|
|||||||| |
|
|
| T |
34051424 |
gagaaagt |
34051431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 793774 - 793707
Alignment:
| Q |
545 |
aaattaagtaataactttcaaacattattttggattaagcccaccaagaatggtaatcaaaagagaaag |
613 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||| || ||| |||||||||||||||| |||| |
|
|
| T |
793774 |
aaattaagtaataacttacaagcataattttggattaag-tcatcaaaaatggtaatcaaaagaaaaag |
793707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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