View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-5 (Length: 890)
Name: NF4780-Insertion-5
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 153 - 706
Target Start/End: Complemental strand, 1697079 - 1696520
Alignment:
| Q |
153 |
cacacgcttatctcatgccaannnnnnnnatttggatgagcttaaataataacaacaataatattggatgttctccattcaagtcgactcgtccatgact |
252 |
Q |
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| T |
1697079 |
cacacgcttatctcatgccatttttttttatttggatgggcttaaataataacaacaataatattggattttcttcattcaagttgactcgtcgatgact |
1696980 |
T |
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| Q |
253 |
taacagctgttcgatagagatcatactattcaaatttttaaattagcaattttaatattaaaatcgttcgatatcgatcaaacgattccacatttactaa |
352 |
Q |
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| T |
1696979 |
aaacaactattagatagagatcagactattcaaatttttaaattagcaattttaatattaaaatcgttcgatatcgatcaaacgattccatagttactaa |
1696880 |
T |
|
| Q |
353 |
cttcatgaatatgtgtagccgagctaatccaagtttcataataaagagataacttctaaaagtaattttaatattnnnnnnnnnnn------ttctttaa |
446 |
Q |
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| T |
1696879 |
cttcatgaatgtgtgtagttgagctagtccaagtttcataataaagagataacttctaaaagcaattttaatattaaaaaaaaaataaaaaattcttcaa |
1696780 |
T |
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| Q |
447 |
tattaaaactgttcgatttcgatcagacgattatgcatttgctaaacttcatgaatgtgtatagtcgagctaatccaattttcataataatgagataact |
546 |
Q |
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| T |
1696779 |
tattaaaatcgttcgatttcgatcagacgattctgcagttactaaacttcatgaatgtgtgtaatcgagctaatccaattttcataataacgagataact |
1696680 |
T |
|
| Q |
547 |
tcaaaaacgaccaaacgagttattaacttcatgagtgtgtatagtcgagctaatccaattttcataataagagataacttcaaaaaatttcataatgaag |
646 |
Q |
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| T |
1696679 |
tcaaaaacgaccaaaggagttattaacttcatgaatgtgtatagtcgagctaatccaattttcataataagagataacttcaaaaaatttcataatgaag |
1696580 |
T |
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| Q |
647 |
agataacttcaaatttaaaaacactatataactcttgttctacgctcacactttccactc |
706 |
Q |
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| T |
1696579 |
agataacttcaaatttaaaaacactatataactcttgttctacgctcacactttccactc |
1696520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 735 - 886
Target Start/End: Complemental strand, 1696472 - 1696320
Alignment:
| Q |
735 |
tttcagcgtgttttctgtttcgcattctttgtgcagnnnnnnntggtg-accaatcagcaatccgtaccgttgttggtatcataggtttgttaatcactt |
833 |
Q |
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| T |
1696472 |
tttcagtgtgttttctgtttcgcattctttgtgcagaaaaaaatggtgaaccaatcagcaattcgtaccgttgttggtatcataggtttgttaatcactt |
1696373 |
T |
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| Q |
834 |
cttcttctcttttcagtatcatttcagtttattttaactttttctcataatcg |
886 |
Q |
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| T |
1696372 |
cttcttctcttttcagtatcatttcagtttattttaactttttatcataatcg |
1696320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 1697211 - 1697140
Alignment:
| Q |
20 |
cgcaaaatcaggttagccacgccagcatctcatccatataactaaacaacccctataatatttccgttaggg |
91 |
Q |
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| T |
1697211 |
cgcaaaatcaggttagccacgccagcatctcatccatataactaaacaacccctataatatttccgttaggg |
1697140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 797 - 850
Target Start/End: Complemental strand, 1685852 - 1685799
Alignment:
| Q |
797 |
cgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagt |
850 |
Q |
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| T |
1685852 |
cgtaccattgttggtatcataggtttgttaatcacttcttcttctcttttcagt |
1685799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 1689382 - 1689331
Alignment:
| Q |
20 |
cgcaaaatcaggttagccacgccagcatctcatccatataactaaacaaccc |
71 |
Q |
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| T |
1689382 |
cgcaaaatcatgttagccacgccagcatcttatccatataacaaaacaaccc |
1689331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 731 - 770
Target Start/End: Complemental strand, 1685909 - 1685870
Alignment:
| Q |
731 |
cctctttcagcgtgttttctgtttcgcattctttgtgcag |
770 |
Q |
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| T |
1685909 |
cctctttcagtgtgttttctgtttcgcattctttgtgcag |
1685870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 551
Target Start/End: Complemental strand, 1686138 - 1686085
Alignment:
| Q |
497 |
atgaatgtgtatagtcgagctaatccaattttcataataatgagataacttcaaa |
551 |
Q |
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| T |
1686138 |
atgaatgcgtgtagtcgagctaatccaattttca-aataaatagataacttcaaa |
1686085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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