View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780-Insertion-7 (Length: 609)

Name: NF4780-Insertion-7
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780-Insertion-7
NF4780-Insertion-7
[»] chr5 (3 HSPs)
chr5 (8-609)||(15258588-15259188)
chr5 (478-580)||(32108474-32108576)
chr5 (523-578)||(35101384-35101439)
[»] chr7 (3 HSPs)
chr7 (482-601)||(21636234-21636353)
chr7 (466-566)||(6561119-6561219)
chr7 (478-593)||(41126110-41126225)
[»] chr1 (9 HSPs)
chr1 (481-601)||(46232337-46232457)
chr1 (454-601)||(28424465-28424614)
chr1 (485-592)||(41115972-41116079)
chr1 (466-571)||(30488172-30488277)
chr1 (537-594)||(34167111-34167168)
chr1 (482-561)||(33677689-33677768)
chr1 (476-558)||(11077506-11077588)
chr1 (465-502)||(8155274-8155311)
chr1 (482-555)||(39297333-39297406)
[»] chr8 (6 HSPs)
chr8 (479-596)||(30541879-30541996)
chr8 (461-561)||(27529558-27529658)
chr8 (482-578)||(42689348-42689444)
chr8 (460-558)||(32475578-32475676)
chr8 (476-537)||(24052534-24052595)
chr8 (478-571)||(30998523-30998616)
[»] chr4 (5 HSPs)
chr4 (460-561)||(26698102-26698203)
chr4 (536-593)||(30212963-30213020)
chr4 (460-529)||(53146971-53147040)
chr4 (482-517)||(23636629-23636664)
chr4 (482-560)||(20401601-20401679)
[»] chr2 (11 HSPs)
chr2 (459-597)||(9145593-9145731)
chr2 (484-576)||(2454429-2454521)
chr2 (460-561)||(26159642-26159743)
chr2 (482-537)||(15672290-15672345)
chr2 (543-578)||(23480913-23480948)
chr2 (466-569)||(23847891-23847994)
chr2 (482-537)||(34514362-34514417)
chr2 (487-604)||(39851017-39851133)
chr2 (481-567)||(40704166-40704252)
chr2 (542-604)||(39855076-39855137)
chr2 (542-604)||(39859750-39859811)
[»] chr6 (2 HSPs)
chr6 (482-537)||(12250952-12251007)
chr6 (451-512)||(13649209-13649268)
[»] chr3 (1 HSPs)
chr3 (521-601)||(15666896-15666976)


Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Original strand, 15258588 - 15259188
Alignment:
Q  8 aatacgttatgtggtcattcacctagactttacatcaataattatcataaaaatttaagaaaaaa-tgttcgaatgttaagacttgcacgaacatttgat 106  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  15258588 aatacgttatgtggtcattcacgtagactctacatcaataattatcaaaaaaaattaagaaaaaaatgttcgaatgttaagacttgcaggaacatttgat 15258687  T
Q  107 atgttggagtgcatatttaaatctatatttttcactccgagtgaacaagtgctttttacctctaagttctcaagaaagnnnnnnnnnnnnngacatgcaa 206  Q
    || |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||               ||||||||     
T  15258688 atattggagtgcatatttaaatctacatttttcactccgagtgaacgagtgctttttacctctaggttctcaagaa---gaaaaaaaaaaagacatgcag 15258784  T
Q  207 agattttaagaaagtggaaaacttaaaaagggttcgatgtgttttagtctctataaaatcataaactttcaagtttaatccccattaagtttcagtgtaa 306  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15258785 agatttaaagaaagtggaaaacttaaaaagggttcaatgtgttttagtctctataaaatcataaactttcaagtttaatccccattaagtttcagtgtaa 15258884  T
Q  307 aatttagccctttaaaatattacaatttgtaagaataatccatattttgaaggnnnnnnnnctacaaaagtctatgaggaagaaaaaacagttacatcaa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  15258885 aatttagccctttaaaatattacaatttgtaagaataatccatattttgaaggaaaaaaaactacaaaagtctatgaggaagaaaaaacagttacatcaa 15258984  T
Q  407 tagtcttggtaacatagagcnnnnnnn-ggcaaaatacaagatcgctaaatagcaactctcaaacacaatagagggttaagccaccacatatgatagttg 505  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15258985 tagtcttggtaacatagagcaaaaaaaaggcaaaatacaagatcgctaaatagtaactctcaaacacaatagagggttaagccaccacatatgatagttg 15259084  T
Q  506 aaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttgttgaaaactcg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15259085 aaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttgttgaaaactcg 15259184  T
Q  606 tgca 609  Q
    ||||    
T  15259185 tgca 15259188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 580
Target Start/End: Complemental strand, 32108576 - 32108474
Alignment:
Q  478 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttga 577  Q
    |||||||| ||| || ||||||||| | ||||||||||||   |||||||||||||| ||||| |||||||| ||||||| |||||||||||| || |||    
T  32108576 agggttaaaccatcatatatgatagctaaaagcaaaattagagtgatttgctttcaaacatcagaaagattggagcttaactttctcaagaaggtgatga 32108477  T
Q  578 ata 580  Q
    |||    
T  32108476 ata 32108474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 578
Target Start/End: Original strand, 35101384 - 35101439
Alignment:
Q  523 atttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaa 578  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  35101384 atttgctttcaaccatcaataagattgaagcttaattttgtcaagaagatgttgaa 35101439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 482 - 601
Target Start/End: Original strand, 21636234 - 21636353
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatag 581  Q
    |||||| |||||||||| ||||| |||||||||||||  ||||||||||| ||||| ||||| ||||||||||||| ||| || |||||| |||||| ||    
T  21636234 ttaagctaccacatatggtagttaaaagcaaaattaaggtgatttgcttttaaccaccacaaggattgaagcttaaatttatctagaagaagttgaaaag 21636333  T
Q  582 aatcccccttttgttgaaaa 601  Q
     |||||| ||||||||||||    
T  21636334 gatcccctttttgttgaaaa 21636353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 466 - 566
Target Start/End: Original strand, 6561119 - 6561219
Alignment:
Q  466 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 565  Q
    |||||| || ||||| |||||||||||||||||||| || |||| |||||||| ||||||||| |||||||| || || ||||| ||||||| ||| |||    
T  6561119 caaacataaaagaggattaagccaccacatatgataattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaactttttca 6561218  T
Q  566 a 566  Q
    |    
T  6561219 a 6561219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 478 - 593
Target Start/End: Original strand, 41126110 - 41126225
Alignment:
Q  478 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttga 577  Q
    |||||||||||||||| | |||||||| |||||||||||   ||||||||| || | |||| |  ||||||| ||||| ||||||||| |||||||||||    
T  41126110 agggttaagccaccacgtgtgatagttaaaagcaaaatttggatgatttgcctttagccataagtaagattgtagctttattttctcatgaagatgttga 41126209  T
Q  578 atagaatccccctttt 593  Q
    | ||| || |||||||    
T  41126210 agagattctccctttt 41126225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 481 - 601
Target Start/End: Original strand, 46232337 - 46232457
Alignment:
Q  481 gttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaata 580  Q
    |||||| || |||||||||||||||||||||||||||  |||||| |  |||||||| || ||||||||||||||||||||||||| |||||  ||||||    
T  46232337 gttaagtcatcacatatgatagttgaaagcaaaattagaatgattcgtcttcaaccaccataaagattgaagcttaattttctcaaaaagatcgtgaata 46232436  T
Q  581 gaatcccccttttgttgaaaa 601  Q
     || |  ||||||||||||||    
T  46232437 aaaacttccttttgttgaaaa 46232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 454 - 601
Target Start/End: Original strand, 28424465 - 28424614
Alignment:
Q  454 aatagcaactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagc 553  Q
    ||||| ||||| || |||||| | ||| ||||| || |||||||||||||| ||||||||||||  ||||||| | ||||||||  | |||| | | | |    
T  28424465 aatagtaactcccacacacaaaataggcttaagtcatcacatatgatagttaaaagcaaaattatgatgattttccttcaaccactaaaaaggtcggatc 28424564  T
Q  554 ttaattttctcaagaag--atgttgaatagaatcccccttttgttgaaaa 601  Q
    |||||||||||||||||  ||||||||||||||||| | |||||||||||    
T  28424565 ttaattttctcaagaagatatgttgaatagaatccctcgtttgttgaaaa 28424614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 592
Target Start/End: Original strand, 41115972 - 41116079
Alignment:
Q  485 agccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaat 584  Q
    |||| ||||||||||||  |||||||||||||||||||||   |||||| |||| | |||||||||||||| |||||  || |||||| || ||||| ||    
T  41115972 agcccccacatatgataagtgaaagcaaaattaatatgatcctctttcagccattaaaaagattgaagctttatttttccatgaagatattaaatagtat 41116071  T
Q  585 cccccttt 592  Q
    || |||||    
T  41116072 cctccttt 41116079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 571
Target Start/End: Complemental strand, 30488277 - 30488172
Alignment:
Q  466 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 565  Q
    |||| |||| ||||| || ||||||||||||||| |||||||||||||||||| |||||| || ||||| |   | |||||||| |||||| |||| ||     
T  30488277 caaatacaaaagaggattgagccaccacatatgaaagttgaaagcaaaattaacatgattcgccttcaatctcaaaaaagattggagcttatttttttct 30488178  T
Q  566 agaaga 571  Q
    ||||||    
T  30488177 agaaga 30488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 34167168 - 34167111
Alignment:
Q  537 atcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttg 594  Q
    |||| ||| ||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  34167168 atcagaaaaattgaagcttaattttctcaaaatgatgttgaagagaatcccccttttg 34167111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 561
Target Start/End: Complemental strand, 33677768 - 33677689
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatttt 561  Q
    |||||||| ||||| ||||| || ||||||||||||| ||||||||  ||||||||| | || ||||| |||||||||||    
T  33677768 ttaagccaacacatgtgataattaaaagcaaaattaagatgatttgtcttcaaccattagaaggattggagcttaatttt 33677689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 558
Target Start/End: Complemental strand, 11077588 - 11077506
Alignment:
Q  476 agagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 558  Q
    ||||| ||||||||||| || || | ||| ||||||||||| | ||||||||| ||||||||| | ||||| | |||||||||    
T  11077588 agaggattaagccaccaaatgtggtggttaaaagcaaaattgacatgatttgccttcaaccataaaaaagaatcaagcttaat 11077506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Original strand, 8155274 - 8155311
Alignment:
Q  465 tcaaacacaatagagggttaagccaccacatatgatag 502  Q
    |||||||||||||||||| || ||||||||||||||||    
T  8155274 tcaaacacaatagagggtcaaaccaccacatatgatag 8155311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 39297333 - 39297406
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagctt 555  Q
    |||||||||||||||||||| |  ||||||||| |||| |  |||||||||||||| || |||||  |||||||    
T  39297333 ttaagccaccacatatgataatcaaaagcaaaagtaatttagtttgctttcaaccaccaaaaagagagaagctt 39297406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 596
Target Start/End: Complemental strand, 30541996 - 30541879
Alignment:
Q  479 gggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaa 578  Q
    ||||||||||||| ||||||||| || ||||||||||||  |||||||| |||||||||  | || ||||| |||||||||||| | | ||| || ||||    
T  30541996 gggttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttccctataagttgatgaa 30541897  T
Q  579 tagaatcccccttttgtt 596  Q
    |||| || ||||||||||    
T  30541896 tagagtctcccttttgtt 30541879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 561
Target Start/End: Complemental strand, 27529658 - 27529558
Alignment:
Q  461 actctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattt 560  Q
    |||||||||||  | ||||| |||| |||| | | ||||||||  ||||||||||| || ||||||||||||| ||| ||| | ||||||| ||||||||    
T  27529658 actctcaaacaagagagaggattaaaccactataaatgatagtcaaaagcaaaattgatctgatttgctttcagccaccactatgattgaaacttaattt 27529559  T
Q  561 t 561  Q
    |    
T  27529558 t 27529558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 578
Target Start/End: Complemental strand, 42689444 - 42689348
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaa 578  Q
    |||||||||||||  |||||| | ||| |||||||||| | |||  ||||||  ||| |  ||||||||||||||||||| |||||||| |||||||    
T  42689444 ttaagccaccacaagtgataggtaaaaacaaaattaattttattcactttcagtcattagtaagattgaagcttaattttgtcaagaagttgttgaa 42689348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 558
Target Start/End: Original strand, 32475578 - 32475676
Alignment:
Q  460 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 558  Q
    ||||| |||||| || || || || ||||||||||||||||| |||||||| ||||||  ||||||||  |||||||| ||  | ||||||| ||||||    
T  32475578 aactcccaaacaaaagaggggattgagccaccacatatgataattgaaagcgaaattaggatgatttgtcttcaaccaccaatatgattgaaacttaat 32475676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 537
Target Start/End: Complemental strand, 24052595 - 24052534
Alignment:
Q  476 agagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 537  Q
    ||||| ||||||||||||||||| || |||||| ||||| ||  ||||||||| ||||||||    
T  24052595 agaggattaagccaccacatatggtaattgaaaacaaaagtataatgatttgccttcaacca 24052534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 30998523 - 30998616
Alignment:
Q  478 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaaga 571  Q
    |||||||||| ||||||| |||||  | |||||||||||||   |||| |||||||  |||||  | ||||||| ||||||||| |||||||||    
T  30998523 agggttaagctaccacatgtgataagtaaaagcaaaattaagccgattcgctttcagacatcaatatgattgaaacttaattttgtcaagaaga 30998616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 561
Target Start/End: Complemental strand, 26698203 - 26698102
Alignment:
Q  460 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatt 559  Q
    ||||| |||||| || ||||| |||||||||||||| ||||| || ||||||||||||  ||||||||  |||||||| || || |||||||||||||||    
T  26698203 aactcccaaacataaaagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatt 26698104  T
Q  560 tt 561  Q
    ||    
T  26698103 tt 26698102  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 536 - 593
Target Start/End: Complemental strand, 30213020 - 30212963
Alignment:
Q  536 catcacaaagattgaagcttaattttctcaagaagatgttgaatagaatccccctttt 593  Q
    ||||| || ||||| ||||| |||||||||||||||||||| | ||||||||||||||    
T  30213020 catcaaaaggattggagcttgattttctcaagaagatgttgcaaagaatccccctttt 30212963  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 53146971 - 53147040
Alignment:
Q  460 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgct 529  Q
    ||||| |||||| || ||||| ||||||||||||||||| || || ||||||||||||  ||||||||||    
T  53146971 aactcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatgatgatttgct 53147040  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Complemental strand, 23636664 - 23636629
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaatta 517  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23636664 ttaagccaccacatatgatagttaaaagcaaaatta 23636629  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 560
Target Start/End: Complemental strand, 20401679 - 20401601
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattt 560  Q
    ||||||||||||| ||||||   ||||| |||||||  |||||| ||||||||||| ||  |||||| |||||||||||    
T  20401679 ttaagccaccacaaatgataagagaaagtaaaattaggatgattcgctttcaaccaccaataagattaaagcttaattt 20401601  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 597
Target Start/End: Complemental strand, 9145731 - 9145593
Alignment:
Q  459 caactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 558  Q
    |||||| |||||| || ||||| |||||||||||  | || || || ||||||||||||   |||||||| |||||||| || |||||||| ||||||||    
T  9145731 caactcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaat 9145632  T
Q  559 tttctcaagaagatgttgaatagaatcccccttttgttg 597  Q
    ||| || ||||| || | |||||||| |||| |||||||    
T  9145631 tttatctagaagctgattaatagaattccccgtttgttg 9145593  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 576
Target Start/End: Complemental strand, 2454521 - 2454429
Alignment:
Q  484 aagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttg 576  Q
    ||||||||| | ||||||||| |||||||||||||| || || ||||||||||||||  ||||||| || |||||||| || ||||| |||||    
T  2454521 aagccaccatagatgatagttaaaagcaaaattaatgtgtttcgctttcaaccatcagtaagattgtagtttaattttatcgagaagttgttg 2454429  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 561
Target Start/End: Original strand, 26159642 - 26159743
Alignment:
Q  460 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatt 559  Q
    |||||||||||| || ||||| |||||||||||||| |||||  | ||||||||||||  ||||||||  |||| |||  | || |||||||||||||||    
T  26159642 aactctcaaacataaaagaggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaatt 26159741  T
Q  560 tt 561  Q
    ||    
T  26159742 tt 26159743  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 15672345 - 15672290
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 537  Q
    |||||||||||||||||||| | ||||||||||||| | |||||| ||||||||||    
T  15672345 ttaagccaccacatatgataatcgaaagcaaaattagtgtgatttactttcaacca 15672290  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 578
Target Start/End: Complemental strand, 23480948 - 23480913
Alignment:
Q  543 aagattgaagcttaattttctcaagaagatgttgaa 578  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23480948 aagattgaagcttaattttgtcaagaagatgttgaa 23480913  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 569
Target Start/End: Complemental strand, 23847994 - 23847891
Alignment:
Q  466 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 565  Q
    |||||| || ||||| || |||||||||||||| ||||| ||||||||||| || || || ||| |||||||||   | ||||| | ||||||||| |||    
T  23847994 caaacataaaagaggatttagccaccacatatggtagttaaaagcaaaattgatgtgtttcgctctcaaccatccataggattgcatcttaattttgtca 23847895  T
Q  566 agaa 569  Q
    ||||    
T  23847894 agaa 23847891  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 537
Target Start/End: Original strand, 34514362 - 34514417
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 537  Q
    ||||||||||||||||||||||| ||||||||||| |  |||||||  ||||||||    
T  34514362 ttaagccaccacatatgatagttaaaagcaaaattgacgtgatttgtcttcaacca 34514417  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 604
Target Start/End: Original strand, 39851017 - 39851133
Alignment:
Q  487 ccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcc 586  Q
    |||||||||||||||||| ||| ||||| | |  |||| ||| |||  |||  | |||||||| |||||||||||||||  ||||||||||| ||| |||    
T  39851017 ccaccacatatgatagttaaaaacaaaagttaggtgatatgccttcggccactagaaagattgtagcttaattttctca--aagatgttgaagagagtcc 39851114  T
Q  587 cccttttg-ttgaaaactc 604  Q
    | |||||| ||||||||||    
T  39851115 ctcttttgattgaaaactc 39851133  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 567
Target Start/End: Complemental strand, 40704252 - 40704166
Alignment:
Q  481 gttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaag 567  Q
    |||||||||||||| ||||||    |||||||||||   | |||||||||| ||||||||  ||||||| ||||||||||| |||||    
T  40704252 gttaagccaccacaaatgataagaaaaagcaaaatttggacgatttgcttttaaccatcaataagattgcagcttaattttatcaag 40704166  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 604
Target Start/End: Original strand, 39855076 - 39855137
Alignment:
Q  542 aaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttg-ttgaaaactc 604  Q
    |||||||| |||||||||||||||  ||||||||||| ||| |||| |||||| ||||||||||    
T  39855076 aaagattgtagcttaattttctca--aagatgttgaagagagtccctcttttgattgaaaactc 39855137  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 604
Target Start/End: Original strand, 39859750 - 39859811
Alignment:
Q  542 aaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttg-ttgaaaactc 604  Q
    |||||||| |||||||||||||||  ||||||||||| ||| |||| |||||| ||||||||||    
T  39859750 aaagattgtagcttaattttctca--aagatgttgaagagagtccctcttttgattgaaaactc 39859811  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 12251007 - 12250952
Alignment:
Q  482 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 537  Q
    |||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||    
T  12251007 ttaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaacca 12250952  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 13649209 - 13649268
Alignment:
Q  451 ctaaatagcaactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaa 512  Q
    ||||||| |||||| |||||||||  |||  |||| ||||||||||||||||||||||||||    
T  13649209 ctaaataacaactcccaaacacaa--gagtattaaaccaccacatatgatagttgaaagcaa 13649268  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 601
Target Start/End: Complemental strand, 15666976 - 15666896
Alignment:
Q  521 tgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcccccttttgttgaaaa 601  Q
    |||||||| ||||| || || |||||||||||||| ||||||||| ||| ||| | || ||| ||||||||||||| ||||    
T  15666976 tgatttgccttcaaacaccaaaaagattgaagctttattttctcatgaacatgctaaagagattcccccttttgtttaaaa 15666896  T

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