View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780-Insertion-8 (Length: 603)

Name: NF4780-Insertion-8
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780-Insertion-8
NF4780-Insertion-8
[»] chr8 (18 HSPs)
chr8 (7-603)||(2516708-2517304)
chr8 (414-476)||(10170375-10170437)
chr8 (320-369)||(2515727-2515776)
chr8 (406-457)||(34259803-34259854)
chr8 (237-343)||(2506022-2506128)
chr8 (405-447)||(3066041-3066083)
chr8 (194-250)||(2512635-2512692)
chr8 (412-445)||(25799154-25799187)
chr8 (407-447)||(1979413-1979453)
chr8 (7-95)||(2505774-2505862)
chr8 (411-445)||(16824392-16824426)
chr8 (409-443)||(31551857-31551891)
chr8 (415-457)||(43534933-43534975)
chr8 (412-445)||(25488801-25488834)
chr8 (405-457)||(6501494-6501546)
chr8 (405-457)||(14496033-14496084)
chr8 (411-447)||(28144067-28144103)
chr8 (411-447)||(29096951-29096987)
[»] chr6 (10 HSPs)
chr6 (406-447)||(34625734-34625775)
chr6 (405-447)||(34598537-34598579)
chr6 (406-441)||(14244051-14244086)
chr6 (414-444)||(6294557-6294587)
chr6 (405-447)||(30781416-30781458)
chr6 (409-447)||(32577482-32577520)
chr6 (410-447)||(4945264-4945301)
chr6 (415-447)||(7564182-7564214)
chr6 (406-446)||(17422274-17422314)
chr6 (405-457)||(24102051-24102103)
[»] chr4 (9 HSPs)
chr4 (406-447)||(32369930-32369971)
chr4 (416-458)||(18783987-18784029)
chr4 (405-458)||(3458172-3458225)
chr4 (405-448)||(26369447-26369490)
chr4 (408-447)||(31277042-31277081)
chr4 (406-448)||(12441788-12441830)
chr4 (406-447)||(843159-843200)
chr4 (414-443)||(2796554-2796583)
chr4 (411-447)||(12710008-12710044)
[»] chr3 (13 HSPs)
chr3 (412-447)||(49636844-49636879)
chr3 (426-500)||(7513338-7513410)
chr3 (406-457)||(28576716-28576767)
chr3 (400-447)||(32166201-32166248)
chr3 (404-447)||(47542533-47542576)
chr3 (414-447)||(18268023-18268056)
chr3 (412-457)||(21768612-21768657)
chr3 (412-453)||(55053787-55053828)
chr3 (405-457)||(7563206-7563258)
chr3 (412-452)||(31207845-31207885)
chr3 (411-447)||(36301998-36302034)
chr3 (413-457)||(41036776-41036820)
chr3 (382-430)||(55108269-55108317)
[»] chr1 (7 HSPs)
chr1 (411-454)||(26698193-26698236)
chr1 (400-447)||(29230059-29230106)
chr1 (426-500)||(38594210-38594284)
chr1 (413-447)||(48317604-48317638)
chr1 (406-447)||(1118414-1118455)
chr1 (413-446)||(4769327-4769360)
chr1 (407-444)||(6440870-6440907)
[»] chr2 (13 HSPs)
chr2 (406-452)||(11781576-11781622)
chr2 (407-447)||(14268751-14268791)
chr2 (408-447)||(13252319-13252358)
chr2 (406-448)||(6736490-6736532)
chr2 (405-447)||(8765419-8765461)
chr2 (405-447)||(28341323-28341365)
chr2 (414-471)||(30563417-30563474)
chr2 (407-459)||(31095144-31095197)
chr2 (407-447)||(34687007-34687048)
chr2 (407-447)||(34709419-34709460)
chr2 (412-457)||(39459790-39459835)
chr2 (415-447)||(17427327-17427359)
chr2 (407-447)||(42043215-42043255)
[»] scaffold0147 (1 HSPs)
scaffold0147 (405-458)||(37670-37723)
[»] chr7 (8 HSPs)
chr7 (384-447)||(18750852-18750917)
chr7 (406-447)||(28266474-28266515)
chr7 (406-442)||(31020714-31020750)
chr7 (404-443)||(40826513-40826552)
chr7 (412-444)||(7139462-7139494)
chr7 (406-446)||(13803668-13803708)
chr7 (413-441)||(13859528-13859556)
chr7 (405-457)||(22371078-22371130)
[»] chr5 (3 HSPs)
chr5 (416-509)||(28322251-28322350)
chr5 (414-447)||(9878050-9878083)
chr5 (413-458)||(39828473-39828518)


Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 7 - 603
Target Start/End: Original strand, 2516708 - 2517304
Alignment:
Q  7 aatttattttttaacagatccacctagttgcaaaagacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattc 106  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516708 aatttattttttaacatatccacctggttgcaaaagatgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattc 2516807  T
Q  107 ttggtaatcatactcgttttcaagttacaacctacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgctaaaattct 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2516808 ttggtaatcatactcgttttcaagttacaacttacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgctaaaatttt 2516907  T
Q  207 cttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516908 cttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaata 2517007  T
Q  307 taagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactgacaatg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517008 taagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactgacaatg 2517107  T
Q  407 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517108 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgc 2517207  T
Q  507 tagggaattcaaaacagtctaacttaaaaaccagaatattcatcgtttatgcaggaggcatatgcacatataacaacataatcagataaataccttc 603  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517208 tagagaattcaaaacagtataacttaaaaaccagaatattcatcgtttatgcaggaggcatatgcacatataacaacataatcagataaataccttc 2517304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 10170437 - 10170375
Alignment:
Q  414 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagatacc 476  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaactacatgggttgtgttggtgtctgatacc 10170375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 2515727 - 2515776
Alignment:
Q  320 aagaccttgattgttgttattgtaattagggaaattcaaaacctatgaag 369  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2515727 aagaccttgattgttgttattgtaattagggaaatttagaacctatgaag 2515776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 457
Target Start/End: Complemental strand, 34259854 - 34259803
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  34259854 gacatcggtaataatttgagaaaatgaaataattgaatataactagacgtgt 34259803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 2506022 - 2506128
Alignment:
Q  237 agaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgt 336  Q
    |||||||||||||| ||||| | |||||| |||||||||| ||| |  |  | |||||| ||||| ||||||  || |||||||| |||||||||||||     
T  2506022 agaattgaaattttgtaataaaattaggctaattctagtattttggttacattacagtaatttcgtaatatagctagtgagcaaaaaccttgattgttga 2506121  T
Q  337 tattgta 343  Q
    |||||||    
T  2506122 tattgta 2506128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 3066041 - 3066083
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  3066041 tgacacaggtaataatttgagaaaatggattaattgaatgtaa 3066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 2512635 - 2512692
Alignment:
Q  194 ctgctaaaattctcttcgattaggctaactatgt-aacacttgtagaattgaaatttt 250  Q
    |||||| |||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  2512635 ctgctacaattctcttcaattaggctaactatgtaaacatttctagaattgaaatttt 2512692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 25799154 - 25799187
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgt 445  Q
    ||||||||||||||||||||||||||||||||||    
T  25799154 ggtaataatttgagaaaatgaattaattgaatgt 25799187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 1979413 - 1979453
Alignment:
Q  407 acaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaa 1979453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 2505774 - 2505862
Alignment:
Q  7 aatttattttttaacagatccacctagttgcaaaagacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaac 95  Q
    |||||||| || ||||||||||||| |||||||||||  ||  || |||||||||||| | ||||||||| | || ||| |||||||||    
T  2505774 aatttattcttcaacagatccacctggttgcaaaagatatatttttaagtaaaggaaggccatatttttgcttgtgaatgaaaagaaac 2505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 16824392 - 16824426
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgt 445  Q
    |||||||||||||||||||||||||| ||||||||    
T  16824392 cggtaataatttgagaaaatgaattatttgaatgt 16824426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 31551891 - 31551857
Alignment:
Q  409 accggtaataatttgagaaaatgaattaattgaat 443  Q
    |||||||||||||||||||||||||| ||||||||    
T  31551891 accggtaataatttgagaaaatgaataaattgaat 31551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 457
Target Start/End: Original strand, 43534933 - 43534975
Alignment:
Q  415 aataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgt 43534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 25488801 - 25488834
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgt 445  Q
    |||| |||||||||||||||||||||||||||||    
T  25488801 ggtattaatttgagaaaatgaattaattgaatgt 25488834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 6501494 - 6501546
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||||| ||||||||||||||| |||||| ||||| |||||||| ||| ||||    
T  6501494 tgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 14496084 - 14496033
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    ||||||| ||||||||||||||||||| | | |||||||||||||||| ||||    
T  14496084 tgacaccagtaataatttgagaaaatg-agtgattgaatgtaactacatgtgt 14496033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 28144103 - 28144067
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  28144103 cggtaataatttgagaaaatcaattaatagaatgtaa 28144067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 29096951 - 29096987
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  29096951 cggtaataatttaagaaaataaattaattgaatgtaa 29096987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 34625734 - 34625775
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  34625734 gacaccgataataatttgagaaaatgaattaattgaatgtaa 34625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 34598537 - 34598579
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  34598537 tgacaccgataataatttgagaaaatgaattaattggatgtaa 34598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 441
Target Start/End: Complemental strand, 14244086 - 14244051
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattga 441  Q
    |||||||||| |||||||||||||||||||||||||    
T  14244086 gacaccggtagtaatttgagaaaatgaattaattga 14244051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 444
Target Start/End: Complemental strand, 6294587 - 6294557
Alignment:
Q  414 taataatttgagaaaatgaattaattgaatg 444  Q
    |||||||||||||||||||||||||||||||    
T  6294587 taataatttgagaaaatgaattaattgaatg 6294557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 30781458 - 30781416
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||| |||||||| |||||||||||| |||||||||    
T  30781458 tgacaccggtactaatttgataaaatgaattaactgaatgtaa 30781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 32577520 - 32577482
Alignment:
Q  409 accggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||| || |||||||||||||||||||||||||||||    
T  32577520 accggtgatgatttgagaaaatgaattaattgaatgtaa 32577482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 4945264 - 4945301
Alignment:
Q  410 ccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  4945264 ccggtaattgtttgagaaaatgaattaattgaatgtaa 4945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 447
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
Q  415 aataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||| ||||||||||||||||    
T  7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 17422314 - 17422274
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgta 446  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  17422314 gacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 24102103 - 24102051
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||||| |||||||||||||| || |||| || ||||||||||| ||||||||    
T  24102103 tgacactggtaataatttgagtaagtgaactatttgaatgtaaccacacgtgt 24102051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 458
Target Start/End: Original strand, 18783987 - 18784029
Alignment:
Q  416 ataatttgagaaaatgaattaattgaatgtaactacacgtgtt 458  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgtt 18784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 3458225 - 3458172
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 458  Q
    ||||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
T  3458225 tgacaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 3458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 26369490 - 26369447
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaac 448  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||    
T  26369490 tgacatcggtagtaatttgagaaaatgaattatttgaatgtaac 26369447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 31277081 - 31277042
Alignment:
Q  408 caccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  31277081 caccgataataatttgagaaaatgaactaattgaatgtaa 31277042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 448
Target Start/End: Complemental strand, 12441830 - 12441788
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaac 448  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  12441830 gacaccggtaatactttgagaaaatgaatcaattgaatctaac 12441788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 843200 - 843159
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||    
T  843200 gacactggtaataatttgagaaaatgaattatttgaacgtaa 843159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 2796554 - 2796583
Alignment:
Q  414 taataatttgagaaaatgaattaattgaat 443  Q
    ||||||||||||||||||||||||||||||    
T  2796554 taataatttgagaaaatgaattaattgaat 2796583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 12710008 - 12710044
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  12710008 cggtaataatttgagaaaataaattaattgaacgtaa 12710044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 412 - 447
Target Start/End: Complemental strand, 49636879 - 49636844
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||||||||||||||||||||||||||||    
T  49636879 ggtaataatttgagaaaatgaattaattgaatgtaa 49636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 7513410 - 7513338
Alignment:
Q  426 aaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgt 500  Q
    |||||||||| ||||||||||| ||||  |||| ||||||||| ||| |||||| | | ||||||||||||||||    
T  7513410 aaaatgaatttattgaatgtaattaca--tgttgtgttggtgttagacaccagatacggctttgatcagaagtgt 7513338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 28576716 - 28576767
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||||||||||||||||||||||||||   |||||||||||| |||| ||||    
T  28576716 gacaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 32166248 - 32166201
Alignment:
Q  400 gacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||    
T  32166248 gacattgacactggtaataatttgagaaaatgacataattgaatgtaa 32166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 47542533 - 47542576
Alignment:
Q  404 atgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||| |||||||||||||||||||||| || ||||||||||    
T  47542533 atgacactggtaataatttgagaaaatgaactatttgaatgtaa 47542576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Complemental strand, 18268056 - 18268023
Alignment:
Q  414 taataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||||||||||||||||||||| ||||    
T  18268056 taataatttgagaaaatgaattaattgaacgtaa 18268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 21768612 - 21768657
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| ||||    
T  21768612 ggtaataatttgagaaaatgaattatttgaacgtaaccacatgtgt 21768657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 55053787 - 55053828
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgtaactacac 453  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
T  55053787 ggtaataatttaagaaaatgaattatatgaatgtaactacac 55053828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 7563258 - 7563206
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||||||  |||||||||||||| ||| | |||||||||||| ||||||||||    
T  7563258 tgacaccaataataatttgagaatatggaataattgaatgtatctacacgtgt 7563206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 31207845 - 31207885
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgtaactaca 452  Q
    |||||| ||||||||||||||  ||||||||||||||||||    
T  31207845 ggtaattatttgagaaaatgacataattgaatgtaactaca 31207885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 41036820 - 41036776
Alignment:
Q  413 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
T  41036820 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 41036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 55108317 - 55108269
Alignment:
Q  382 acacgacactacgacactgacaatgacaccggtaataatttgagaaaat 430  Q
    |||||||||||  | | |||||||||||||||||||||||||| |||||    
T  55108317 acacgacactaatatattgacaatgacaccggtaataatttgataaaat 55108269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 26698236 - 26698193
Alignment:
Q  411 cggtaataatttgagaaaatgaattaattgaatgtaactacacg 454  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  26698236 cggtaataatctgagaaaatgaattaattgaatgtaattacacg 26698193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 29230059 - 29230106
Alignment:
Q  400 gacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||    
T  29230059 gacattgacaccggtaataatttgagaaaatgacataattgaatgtaa 29230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 38594210 - 38594284
Alignment:
Q  426 aaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgt 500  Q
    |||||||||||||||||  |||  ||  ||||| ||||||||||||| |||| ||| |||||| |||||||||||    
T  38594210 aaaatgaattaattgaacataatcacgtgtgttgtgttggtgtcagacaccacacacgcctttcatcagaagtgt 38594284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 48317604 - 48317638
Alignment:
Q  413 gtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||||||||||||| |||||||||||||    
T  48317604 gtaataatttgagaaaatgaaataattgaatgtaa 48317638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 1118455 - 1118414
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||    
T  1118455 gacacgggtgataatttgaaaaaatgaattaattgaatgtaa 1118414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 4769360 - 4769327
Alignment:
Q  413 gtaataatttgagaaaatgaattaattgaatgta 446  Q
    |||||||||||||||||||| |||||||||||||    
T  4769360 gtaataatttgagaaaatgagttaattgaatgta 4769327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 6440907 - 6440870
Alignment:
Q  407 acaccggtaataatttgagaaaatgaattaattgaatg 444  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6440907 acactggtaataatttgagaaaatgaatttattgaatg 6440870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 11781622 - 11781576
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaactaca 452  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||    
T  11781622 gacaccagtaataatttgagaaaatgaaatatttgaatgtaactaca 11781576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 14268791 - 14268751
Alignment:
Q  407 acaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  14268791 acaccggtaataatttgagaaaatgacttaattgaacgtaa 14268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 13252358 - 13252319
Alignment:
Q  408 caccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  13252358 caccggtaataatgtgagaaaatgaattagttgaatgtaa 13252319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 6736490 - 6736532
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaac 448  Q
    |||||||||||||||||||||| ||| | ||||||||||||||    
T  6736490 gacaccggtaataatttgagaatatggaataattgaatgtaac 6736532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 8765461 - 8765419
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||| ||||||| |||||| |||||||||||||||||    
T  8765461 tgacaccggtgataatttaagaaaacgaattaattgaatgtaa 8765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 28341323 - 28341365
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  28341323 tgacgccggtaatagtttgagaaaatgaattaattaaatgtaa 28341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 471
Target Start/End: Original strand, 30563417 - 30563474
Alignment:
Q  414 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcag 471  Q
    |||||||||||||||||||  ||||| |||||||||| | ||||| ||| ||||||||    
T  30563417 taataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcag 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 459
Target Start/End: Original strand, 31095144 - 31095197
Alignment:
Q  407 acaccggtaataatttgagaaaat-gaattaattgaatgtaactacacgtgtta 459  Q
    |||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||    
T  31095144 acactggtaataatttgagaaaatggaagtaattgaatataactacatgtgtta 31095197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 34687007 - 34687048
Alignment:
Q  407 acaccggtaataatttgagaaaatga-attaattgaatgtaa 447  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  34687007 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34687048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 34709419 - 34709460
Alignment:
Q  407 acaccggtaataatttgagaaaatga-attaattgaatgtaa 447  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  34709419 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34709460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 39459790 - 39459835
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||    
T  39459790 ggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgt 39459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 447
Target Start/End: Complemental strand, 17427359 - 17427327
Alignment:
Q  415 aataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||||||||||| ||||    
T  17427359 aataatttgagaaaatgaattaattgaaggtaa 17427327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 42043255 - 42043215
Alignment:
Q  407 acaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  42043255 acaccgataataatttaataaaatgaattaattgaatgtaa 42043215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 37723 - 37670
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 458  Q
    ||||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
T  37723 tgacaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 37670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 18750852 - 18750917
Alignment:
Q  384 acgacactacgacactgaca-at-gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||||||||| || |||| |||||||||||| |||||||||  |||||||||||||    
T  18750852 acgacactacgacactgacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaa 18750917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 28266474 - 28266515
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 447  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  28266474 gacaccggtaataatttgagaaaataaattaattggatgtaa 28266515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 31020750 - 31020714
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaa 442  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31020750 gacaccggtaacaatttgagaaaatgaattaattgaa 31020714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 443
Target Start/End: Original strand, 40826513 - 40826552
Alignment:
Q  404 atgacaccggtaataatttgagaaaatgaattaattgaat 443  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  40826513 atgacactggtgataatttgagaaaatgaattaattgaat 40826552  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 7139494 - 7139462
Alignment:
Q  412 ggtaataatttgagaaaatgaattaattgaatg 444  Q
    ||||||| |||||||||||||||||||||||||    
T  7139494 ggtaatattttgagaaaatgaattaattgaatg 7139462  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 13803668 - 13803708
Alignment:
Q  406 gacaccggtaataatttgagaaaatgaattaattgaatgta 446  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  13803668 gacacaggtaataatttgagaaaatgaaataattgagtgta 13803708  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 13859528 - 13859556
Alignment:
Q  413 gtaataatttgagaaaatgaattaattga 441  Q
    |||||||||||||||||||||||||||||    
T  13859528 gtaataatttgagaaaatgaattaattga 13859556  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 22371078 - 22371130
Alignment:
Q  405 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 457  Q
    |||||| |||| |||| |||||||| ||| |||||||||||||||||| ||||    
T  22371078 tgacactggtattaatatgagaaaaggaaataattgaatgtaactacatgtgt 22371130  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 509
Target Start/End: Original strand, 28322251 - 28322350
Alignment:
Q  416 ataatttgagaaaatgaattaattgaatgtaactacacgtgtt------atgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgctag 509  Q
    ||||||||||||||||||||||||||||||||  ||| |||||       ||| | |||| |||||  |||||||||| |||||||||||| ||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgtagtgtcgatgtcggatactggacatgccttcgatcagaagtgtcggtgctag 28322350  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Complemental strand, 9878083 - 9878050
Alignment:
Q  414 taataatttgagaaaatgaattaattgaatgtaa 447  Q
    |||||||||||||| |||||||||||||||||||    
T  9878083 taataatttgagaatatgaattaattgaatgtaa 9878050  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 39828473 - 39828518
Alignment:
Q  413 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 458  Q
    ||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  39828473 gtaataatttgagaatatgaaataattgaatgtaaccacatgtgtt 39828518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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