View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780-Insertion-9 (Length: 581)
Name: NF4780-Insertion-9
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 111 - 425
Target Start/End: Complemental strand, 42800303 - 42799989
Alignment:
| Q |
111 |
ctaaaagtgtgaattttatgtttgcttgtatagaaattgaaataaaatcagatgctaccttggctgaagctgtgaaaatactagcacgtcacaatattct |
210 |
Q |
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| T |
42800303 |
ctaaaagtgtgaattttatgtttgcttgtatagaaattgaaataaaatcagatgctaccttggctgaagctgtgaaaatactagcacgtcacaatattct |
42800204 |
T |
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| Q |
211 |
gagtgcacctgttgtggatgttgatgcacctgaagatgctacttggattgatagatacatcggaatagttgagtttgctggaattgttgtatggattttg |
310 |
Q |
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| T |
42800203 |
gagtgcacctgttgtggatgttgatgcacctgaagatgctacttggattgatagatacatcggaatagttgagtttgctggaattgttgtatggattttg |
42800104 |
T |
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| Q |
311 |
catcaggttagatacatatgtcacttgtcaattcaattatttcactttcagaataaaaatgaggaaaagatcaaaagacatatgaatctaaaatttacaa |
410 |
Q |
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| T |
42800103 |
catcaggttagatacatatgtcacttgtcaattcaattatttcactttcagaataaaaatgaggaaaagatcaaaagacatatgaatctaaaatttacaa |
42800004 |
T |
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| Q |
411 |
tcaatttttgtactt |
425 |
Q |
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| T |
42800003 |
tcaatttttgtactt |
42799989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 42799982 - 42799937
Alignment:
| Q |
531 |
acagtgttttcatatctaaaaatgatatgatacctgttctatttaa |
576 |
Q |
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| T |
42799982 |
acagtgttttcatatctaaaaatgatatgatacctgttctatttaa |
42799937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 42800406 - 42800377
Alignment:
| Q |
8 |
aaaccaaccaactatggtaccaaacatgca |
37 |
Q |
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| T |
42800406 |
aaaccaaccaactatggtaccaaacatgca |
42800377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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