View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_11 (Length: 429)
Name: NF4780_high_11
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 31953072 - 31952966
Alignment:
| Q |
315 |
gcatgtgtagatcaaataattgctcattataacatatgaagaaaattttgaattttctcaagtaatgtcagatttgggtcatttatttgaaataacttag |
414 |
Q |
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| T |
31953072 |
gcatttgtagatcaaataattgctccttataacagatgaagaaaattttgaattttctcaagtaatgtcagatttgggtcatttattcgataaaacttag |
31952973 |
T |
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| Q |
415 |
tattatg |
421 |
Q |
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| T |
31952972 |
tattatg |
31952966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 31953283 - 31953150
Alignment:
| Q |
162 |
ttgtgaataaattgaatattgaatatgcttgtttaaaaacgtcaaattcaatggagaaaacacagtgataaaaattccaataaaatccacacaaccaaa- |
260 |
Q |
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| T |
31953283 |
ttgtgaataaattgaatactgaatatgtttgtttaaaaacgtcaaattcaacggaaaaaacaccatgataaaaatccctttaaaatccacagaaccaaac |
31953184 |
T |
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| Q |
261 |
cttgagccacaactaccaagtcttctgggggtcg |
294 |
Q |
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| T |
31953183 |
cttgaggcacgactgccaagtcttctaggggtcg |
31953150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 31944006 - 31943929
Alignment:
| Q |
179 |
attgaatatgcttgtttaaaaacgtcaaattcaatggagaaaacacagtgataaaaattccaataaaatccacacaac |
256 |
Q |
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| T |
31944006 |
attgaatatgttcgtttaaaaatgtcaaattcgacggagaaaacacaatgataaaaatccttctaaaatccacacaac |
31943929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 31943859 - 31943774
Alignment:
| Q |
339 |
cattataacatatgaagaaaattttgaa-ttttctcaagtaatgtcagatttgggtcatttatttga-aataacttagtattatgt |
422 |
Q |
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| T |
31943859 |
cattataacacatgaagagaattttgaatttttcttaagtaatgttatattttagtcatttattcgataaaaacttagtattatgt |
31943774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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