View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_high_13 (Length: 415)

Name: NF4780_high_13
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_high_13
NF4780_high_13
[»] chr1 (3 HSPs)
chr1 (262-403)||(47511200-47511341)
chr1 (144-216)||(47512240-47512312)
chr1 (137-216)||(47510488-47510567)
[»] chr3 (3 HSPs)
chr3 (262-403)||(41741094-41741235)
chr3 (137-216)||(41741293-41741372)
chr3 (142-216)||(41740399-41740473)
[»] chr7 (4 HSPs)
chr7 (18-136)||(43367223-43367341)
chr7 (140-216)||(1271091-1271167)
chr7 (134-208)||(35380612-35380686)
chr7 (144-216)||(35379308-35379380)
[»] chr2 (3 HSPs)
chr2 (137-216)||(26030133-26030212)
chr2 (142-216)||(26026113-26026187)
chr2 (341-406)||(26029964-26030029)
[»] chr4 (2 HSPs)
chr4 (18-137)||(6200931-6201050)
chr4 (134-181)||(39095877-39095924)
[»] chr8 (1 HSPs)
chr8 (142-182)||(15883809-15883849)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 262 - 403
Target Start/End: Complemental strand, 47511341 - 47511200
Alignment:
Q  262 ttctacactctgaaacaatttgggcggaattttgatactccaacacacgattcttcaacttcccttctttaggtctccagtctccactctcaacctaaga 361  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47511341 ttctacgctctgaaacaatttgggcgggattttgatactccaacacacgattcttcaacttcccttctttaggtctccggtctccactctcaacctaaga 47511242  T
Q  362 aaatggtggtcacaatatctcaatttctatgattgttcacct 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  47511241 aaatggtggtcacaatatctcaatttctatgattgctcacct 47511200  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 47512312 - 47512240
Alignment:
Q  144 gatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47512312 gatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaataaaatggtgg 47512240  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 47510488 - 47510567
Alignment:
Q  137 ggaaacggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  47510488 ggaatcggatcctctccttcagaattctctccatctctctgcttcatccattcctagccattggatcaatcaaatggtgg 47510567  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 262 - 403
Target Start/End: Complemental strand, 41741235 - 41741094
Alignment:
Q  262 ttctacactctgaaacaatttgggcggaattttgatactccaacacacgattcttcaacttcccttctttaggtctccagtctccactctcaacctaaga 361  Q
    |||||||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41741235 ttctacactctgaaacaatttgggtgggattttgataatccaacacacaattcttcaacttcccttctttaggtctccagtctccactctcaacctaaga 41741136  T
Q  362 aaatggtggtcacaatatctcaatttctatgattgttcacct 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  41741135 aaatggtggtcacaatatctcaatttctatgattgctcacct 41741094  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 41741372 - 41741293
Alignment:
Q  137 ggaaacggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41741372 ggaatcggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 41741293  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 41740399 - 41740473
Alignment:
Q  142 cggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41740399 cggatcctctccttcaaaattctctccatctctctccttcatccattcctagccattggatcaatcaaatggtgg 41740473  T

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Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 43367341 - 43367223
Alignment:
Q  18 aaagagagcgatgaaggagttggatgagaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagatttaccgtttgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43367341 aaagagagcgatgaaggagttggatgagaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagatttaccgtttgat 43367242  T
Q  118 catgcatctattcttcata 136  Q
    |||||||||||||||||||    
T  43367241 catgcatctattcttcata 43367223  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 1271091 - 1271167
Alignment:
Q  140 aacggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1271091 aacggatcctctccttcggaattctctccatctctctccttcatttattcctagccactggatcaatcaaatggtgg 1271167  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 35380686 - 35380612
Alignment:
Q  134 ataggaaacggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatca 208  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||   ||| |||||||||||||||||||    
T  35380686 ataggaatcggatcctctccttcagaattctctcaatctctttccttcactaatttctagccattggatcaatca 35380612  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 35379308 - 35379380
Alignment:
Q  144 gatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||||||||||||| |||||| |||||||||||||||||   |||  | |||||| ||||||||| |||||||    
T  35379308 gatcctctccttcaaaattctttccatctctctccttcactaatttttggccattagatcaatcagatggtgg 35379380  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 26030212 - 26030133
Alignment:
Q  137 ggaaacggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||   ||| || |||||||||||||||| |||||||    
T  26030212 ggaatcggatcctctccttcagaattatctccatctctctccttcactaatttctggccattggatcaatcagatggtgg 26030133  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 26026113 - 26026187
Alignment:
Q  142 cggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||   |||  | |||||||||||||||| |||||||    
T  26026113 cggatcctctccttcagaattctctccatctctctccttcactaatttttggccattggatcaatcagatggtgg 26026187  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 26030029 - 26029964
Alignment:
Q  341 gtctccactctcaacctaagaaaatggtggtcacaatatctcaatttctatgattgttcacctatg 406  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| |||||  |||||||||    
T  26030029 gtctccactctcaatctaagaaaatggtggtcaccatatctcaatttctgtgattactcacctatg 26029964  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 6201050 - 6200931
Alignment:
Q  18 aaagagagcgatgaaggagttggatgagaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagatttaccgtttgat 117  Q
    |||||||||  ||||||| ||| |||||||||||||||  || |||||||  |||||| |||| || |||||| |||||||||| ||||| || ||||||    
T  6201050 aaagagagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcatcagaagggaatatgataatgatttgccatttgat 6200951  T
Q  118 catgcatctattcttcatag 137  Q
    || || | ||||||||||||    
T  6200950 cacgcgtttattcttcatag 6200931  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 39095877 - 39095924
Alignment:
Q  134 ataggaaacggatcctctccttcagaattctctccatctctctccttc 181  Q
    ||||||| |||||||||||||||| |||| ||||| ||||||||||||    
T  39095877 ataggaatcggatcctctccttcaaaattgtctccttctctctccttc 39095924  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 15883809 - 15883849
Alignment:
Q  142 cggatcctctccttcagaattctctccatctctctccttca 182  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15883809 cggatcctctccttcagaattctctccatctctctccttca 15883849  T

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