View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_18 (Length: 378)
Name: NF4780_high_18
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 11351633 - 11351408
Alignment:
| Q |
1 |
cacaattcttgccgttgacgttgtggtgcactaatacgccgtgcgcttcacacccttgcaatttttgtcgttgacgctgtcatgaaatttacaaagaatt |
100 |
Q |
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| T |
11351633 |
cacaattcttgccgttgacgttgtggtgcactaatacgctgtgcgcttcacacccctgcaatttttgtcgttgacgctgtcatgaaatttacaaagaatt |
11351534 |
T |
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| Q |
101 |
acaataacatcgtaaaaagtcggataacggacataaatatgatgacaatattaaattcatgtacatgtatggggttaaactaatatgttgataaagtgat |
200 |
Q |
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| T |
11351533 |
acaataacatcataaaaagtcggataacggacataaatatgatgacaatattaaattcatgtacatgtatgaggttaaactaatatgttgata------- |
11351441 |
T |
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| Q |
201 |
taaagtcggattacagtaacatagaaaccgtacat |
235 |
Q |
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| T |
11351440 |
--aagtcggattatagtaacatagaaaccgtacat |
11351408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 11351422 - 11351328
Alignment:
| Q |
275 |
atagaaaccgtacatatgcttttgacaacacaagcatattgattaaa------tcagtacgtttttactatacacaattat-catatcacctaac |
362 |
Q |
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| T |
11351422 |
atagaaaccgtacatatgcttttgacaacacaatcatattgattaaaaaaaatgcagtacgtttttactatacacaattatacatatcacctaac |
11351328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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