View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_20 (Length: 373)
Name: NF4780_high_20
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 293798 - 293446
Alignment:
| Q |
18 |
aaatatgagtgttacttttatgttttaaaagcaaagcatttatttataattcttgttcagcctcttgagacagcaaggcccattattcttttttatttct |
117 |
Q |
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| T |
293798 |
aaatatgagtgttacttttatgttttaaaagcaaagcatttatttaaaattcttgttctgcctcttgagacagcaaggcccattattcttttttatttct |
293699 |
T |
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| Q |
118 |
ttaagtttgcttcatctgacaaggtatgtattgtattgtatagtattcattaagttaagcatcagttgagttgaggatcataaacataactagaaaagca |
217 |
Q |
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| T |
293698 |
ttaagtttgcttcatctgacaaggtatgtatt-----gtatagtattcattaagttaagcatcagttgagttgaggatcataaacataactagaaaagca |
293604 |
T |
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| Q |
218 |
atacaattattcattctcatcatacaactttgtctttaca--nnnnnnnnattggttataaagcttagctaactgtggttagtatcatgtctgtgtgaag |
315 |
Q |
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||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293603 |
atacaattaattattctcatcatacacctttgtctttacattttttttttattggttataaagcttagctaactgtggttagtatcatgtctgtgtgaag |
293504 |
T |
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| Q |
316 |
catttaagaaattggaaaaccacacttcattctgatctcacatgatagtgaaaaactt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293503 |
catttaagaaattggaaaaccacacttcattctgatctcacatgatagtgaaaaactt |
293446 |
T |
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