View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_26 (Length: 348)
Name: NF4780_high_26
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 41485782 - 41485475
Alignment:
| Q |
19 |
cagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagac |
118 |
Q |
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| T |
41485782 |
cagagaatgttagtgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaa-ttctgtagac |
41485690 |
T |
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| Q |
119 |
atacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgcctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485689 |
atacataatgacagaattttgtacattagcacattttcacagggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgcctt |
41485590 |
T |
|
| Q |
219 |
caataactttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485589 |
caataactttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtca |
41485490 |
T |
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| Q |
319 |
atctactgttaaatc |
333 |
Q |
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| T |
41485489 |
atctactgttaaatc |
41485475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 41482501 - 41482263
Alignment:
| Q |
19 |
cagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagac |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41482501 |
cagagaatgttactgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaaattctgtagac |
41482408 |
T |
|
| Q |
119 |
atacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaagg------tattacta-ttg |
211 |
Q |
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| T |
41482407 |
atacataatgacagaattttgtacattagcacatattcacagggtttcttgtataacccttccttttctatatcaatgaaggccatactattactactgg |
41482308 |
T |
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| Q |
212 |
ttgccttcaataactttccatcgtattgcagtatctatatagcct |
256 |
Q |
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|| ||||||||||||||||||| || ||||||| |||||||||| |
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| T |
41482307 |
tttccttcaataactttccatcctactgcagtaggtatatagcct |
41482263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 41482258 - 41482209
Alignment:
| Q |
284 |
caacttggttctctaatatgtaataaatattgtcaatctactgttaaatc |
333 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41482258 |
caacttagttctctaatatgtaatagatattgtcaatctactgttaaatc |
41482209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 20434878 - 20434953
Alignment:
| Q |
115 |
agacatacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatat |
191 |
Q |
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| T |
20434878 |
agacatacacaatgacagaattttgtacattagcacattgtcacatgg-ttcttgtatcacccttctttttctatat |
20434953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 45385559 - 45385644
Alignment:
| Q |
247 |
tatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtcaatctactgttaaatc |
333 |
Q |
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| T |
45385559 |
tatatatcctccatggtcgatgtctctggcatcaaatcaacttggttctctaatatgt-ataaatattgtcaatccactgttaaatc |
45385644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 45385325 - 45385393
Alignment:
| Q |
20 |
agagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaag |
91 |
Q |
| |
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||||||||||| |||| ||||| | ||||||||||| |||||||||| |||||||||||| |||| |||| |
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| T |
45385325 |
agagaatgttactgacaaatttgtgaaaaccaaataaacaataatat---gaagagaaatatactaatcaag |
45385393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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