View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_high_27 (Length: 345)

Name: NF4780_high_27
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_high_27
NF4780_high_27
[»] chr8 (12 HSPs)
chr8 (16-338)||(2516392-2516714)
chr8 (191-338)||(2432455-2432602)
chr8 (191-338)||(2429473-2429620)
chr8 (16-338)||(2512121-2512438)
chr8 (190-338)||(2435815-2435963)
chr8 (206-338)||(2496819-2496951)
chr8 (188-338)||(2505500-2505650)
chr8 (16-88)||(2505708-2505780)
chr8 (16-85)||(2432057-2432126)
chr8 (16-85)||(1459432-1459501)
chr8 (16-85)||(2429139-2429208)
chr8 (16-85)||(2435492-2435561)
[»] chr5 (1 HSPs)
chr5 (210-254)||(41540465-41540509)
[»] chr1 (1 HSPs)
chr1 (224-260)||(1083134-1083170)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 2516714 - 2516392
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaatttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516714 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagtacataagtgatgcagtcgaaatttttt 2516615  T
Q  116 agttcaatatgtttgttgacatgaaaagtatagttaccgtgttacaataaacatgagacataccagtaaccggtggatatcaatttatgtaaattaggta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516614 agttcaatatgtttgttgacatgaaaagtatagttaccgtgttacaataaacatgagacataccagtaaccggtggatatcaatttatgtaaattaggta 2516515  T
Q  216 ctttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2516514 ctttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatgaaactccatggccgcatacctgtgtgt 2516415  T
Q  316 ggaatgatctcacagtataatct 338  Q
    |||||||||||||||||||||||    
T  2516414 ggaatgatctcacagtataatct 2516392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 191 - 338
Target Start/End: Original strand, 2432455 - 2432602
Alignment:
Q  191 gatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaa 290  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  2432455 gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa 2432554  T
Q  291 actccatggccgcatacctgtgtgtggaatgatctcacagtataatct 338  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||    
T  2432555 actccatggccgcatacctgtaagtggaatgatctcacagtataatct 2432602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 191 - 338
Target Start/End: Original strand, 2429473 - 2429620
Alignment:
Q  191 gatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaa 290  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  2429473 gatatcaatttatgtaaactagatactttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaa 2429572  T
Q  291 actccatggccgcatacctgtgtgtggaatgatctcacagtataatct 338  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||    
T  2429573 actccatgggcggatacctgtgtgtggaatgatctcacagtacaatct 2429620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 2512438 - 2512121
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagtacataa--gtgatgcagtcgaaatttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||  | ||  ||  |||||  ||||||||    
T  2512438 ataaatttggatacgatgaagccattaactacaaagaagaacaagacctggatgcagcattgaaaaggtcagtttagaacagttttgcaggagaaatttt 2512339  T
Q  114 ttagttcaatatgtttgttgacatgaaaag-tatagttaccgtgttacaataaacatgagacataccagtaaccggtggatatcaatttatgtaaattag 212  Q
      |||||||||||||||   |||| ||||  ||||||||| | |||   |   ||| ||||||  | | |||| |||||||||||||||  | |||| ||    
T  2512338 --agttcaatatgtttg---acataaaaaaatatagttactgcgtttgta---acacgagacactcaactaactggtggatatcaatttggggaaatcag 2512247  T
Q  213 gtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtg 312  Q
    | ||||||||||||| |||||| ||||||||||||| ||||| || |||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||||    
T  2512246 gcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtg 2512147  T
Q  313 tgtggaatgatctcacagtataatct 338  Q
    |||||||||||||||||||| |||||    
T  2512146 tgtggaatgatctcacagtacaatct 2512121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 190 - 338
Target Start/End: Original strand, 2435815 - 2435963
Alignment:
Q  190 ggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatga 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| | ||||||||    
T  2435815 ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga 2435914  T
Q  290 aactccatggccgcatacctgtgtgtggaatgatctcacagtataatct 338  Q
     | |||||||||||||||||||  ||||||||||||||||||| |||||    
T  2435915 gagtccatggccgcatacctgtaagtggaatgatctcacagtacaatct 2435963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 338
Target Start/End: Complemental strand, 2496951 - 2496819
Alignment:
Q  206 aaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcat 305  Q
    |||| ||| |||| || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||| |||| | |||| ||||||||    
T  2496951 aaatcaggcacttccctgaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcat 2496852  T
Q  306 acctgtgtgtggaatgatctcacagtataatct 338  Q
    |||||  |||||||||||||||||||| |||||    
T  2496851 acctgcatgtggaatgatctcacagtacaatct 2496819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 2505650 - 2505500
Alignment:
Q  188 gtggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatat 287  Q
    |||| ||||| ||||||| ||| ||| |||||||||||||||||||  ||||||||||||| || || || |||||||||||||| ||||||| ||| ||    
T  2505650 gtggttatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacat 2505551  T
Q  288 gaaactccatggccgcatacctgtgtgtggaatgatctcacagtataatct 338  Q
    || | | || || |||||||||||||||||||||||||||||||| |||||    
T  2505550 gagattacaaggtcgcatacctgtgtgtggaatgatctcacagtacaatct 2505500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 2505780 - 2505708
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtcagt 88  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||    
T  2505780 ataaatttggatacgatgaagccattaactacaaagaagagcaagacctcaatgcaacattgaaaaggtcagt 2505708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2432057 - 2432126
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 85  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||    
T  2432057 ataaatttggatatgatgaagcatttaactacaaagaagaacctgacctcaatgcagctttaaaaaggtc 2432126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 1459432 - 1459501
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 85  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||| || ||||||||    
T  1459432 ataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc 1459501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2429139 - 2429208
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 85  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||| || ||||||||    
T  2429139 ataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcagctttgaaaaggtc 2429208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 2435492 - 2435561
Alignment:
Q  16 ataaatttggatacgatgaagccattaactacaaagaagaacatgacctcaatgcagcattaaaaaggtc 85  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||| | |||||||||||    
T  2435492 ataaatttggatatgatgaagcctttaactacaaagaagaaccagacctcaatgcaactttaaaaaggtc 2435561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 41540465 - 41540509
Alignment:
Q  210 taggtactttccagaaggcattgacatttactttgagaatgttgg 254  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||    
T  41540465 taggtactttcccgaaggaattgacatatactttgacaatgttgg 41540509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 1083170 - 1083134
Alignment:
Q  224 aaggcattgacatttactttgagaatgttgggggaaa 260  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  1083170 aaggcattgacattaactttgacaatgttgggggaaa 1083134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University