View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_high_28 (Length: 344)
Name: NF4780_high_28
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 5438877 - 5438676
Alignment:
| Q |
19 |
tattttttgtaacagcgcaactgaagcaatttcaagggcagaaatcgaacgaattctcttcgccgtcgtcgatgggggcacaaacggctcctcctcctcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5438877 |
tattttttgtaacagcgcaactgaagcaatttcaagggcagaaatcgaacgagttctcttcgcagtcgtcgatgggggcacaaacggctcctcctcc--- |
5438781 |
T |
|
| Q |
119 |
gccgccgctacctaaggaaccctttattaagcgctacaagttcgtttttcctgtgcttttggctggtgttggaggtaatttttctaaatccccaaaagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5438780 |
gccgccgctacctaaggaaccctttattaagcactacaagttcttttttcctgtgcttttggctggtgttggaggtaatttttctaaatccccaaaagct |
5438681 |
T |
|
| Q |
219 |
aaaaa |
223 |
Q |
| |
|
||||| |
|
|
| T |
5438680 |
aaaaa |
5438676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 5432391 - 5432177
Alignment:
| Q |
21 |
ttttttgtaacagcgcaactgaagcaatttcaagggca---gaaatcgaacgaattctcttcgccgtcgtcgatgggggcacaaacggctcctcctcctc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||| | |
|
|
| T |
5432391 |
ttttttgtaacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccac |
5432292 |
T |
|
| Q |
118 |
cgccgccgctacctaaggaaccctttattaagcgctacaagttcgtttttcctgtgcttttggc---------tggtgttggaggtaatttttctaaatc |
208 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| ||||| |||| |||||||||||||||||| | | |
|
|
| T |
5432291 |
ctccgccgctgcctaaggaacccttcattaagcgctacaagttcgtttggcctatgctattggctgtcaattttggtattggaggtaatttttctacaac |
5432192 |
T |
|
| Q |
209 |
cccaaaagctaaaaa |
223 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
5432191 |
ccaaaaagctaaaaa |
5432177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 259 - 335
Target Start/End: Complemental strand, 5438640 - 5438564
Alignment:
| Q |
259 |
tgattggtgagtttgtgaaatggggtttgatttatttgacttgttgctgtactagatagttcatgttggagaataat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5438640 |
tgattggtgagtttgtgaaatggggtttgatttctttgacttgttgctgtactagatagttcatgttggagaataat |
5438564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University