View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_3 (Length: 483)
Name: NF4780_high_3
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 215 - 470
Target Start/End: Original strand, 10193160 - 10193415
Alignment:
| Q |
215 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
314 |
Q |
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| T |
10193160 |
acacggattggaaatttgacagaatatttaccaagcctaccggccatgtcagcacgctaaagtcaacactccaacagtttggaatcatattaactaagct |
10193259 |
T |
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| Q |
315 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaaaccatgtaactaaaaattgacttgttaagta |
414 |
Q |
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| T |
10193260 |
tattccactaacttgatcagttagttaagtacaccctcagtggtgtagaccacacatagcttaccaaaagccatgtaactaaaaattgacttgttaagta |
10193359 |
T |
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| Q |
415 |
cacgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttttaaggtga |
470 |
Q |
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| T |
10193360 |
catgaagcttgtgtgcagcttaactggtcaaccctaaaaattgacttgtaaggtga |
10193415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 10192768 - 10192965
Alignment:
| Q |
19 |
atttcagaaggaggaactctgcttcacttgtgatnnnnnnnttcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaatttg |
118 |
Q |
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| T |
10192768 |
atttcagaaggaggaactctgcttcacttgtgataaaaaaattcacaccttcacatgtttgtaaaacatttcatggtgatgattgtgaaggaagaattcg |
10192867 |
T |
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| Q |
119 |
agggagtagaannnnnnnagctagagcaaaatgaaggagttgaattctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
216 |
Q |
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| T |
10192868 |
agggagtagaagggggggagctagagcaaaatgaaggagttgagttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
10192965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 19460668 - 19460615
Alignment:
| Q |
163 |
ttctttgaatgagaaaatggtgaagttggccattcaaagcatagtagggcttac |
216 |
Q |
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| T |
19460668 |
ttctttgaatgagagaatggtgaagttagacattcaaagcatggtagggcttac |
19460615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 470
Target Start/End: Complemental strand, 19459820 - 19459788
Alignment:
| Q |
438 |
ctggtcaaccctaaaaattgacttttaaggtga |
470 |
Q |
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| T |
19459820 |
ctggtcaaccctaaaaattgacttgtaaggtga |
19459788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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