View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_31 (Length: 325)
Name: NF4780_high_31
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 28241138 - 28240826
Alignment:
| Q |
1 |
tagttaatatgagaggtatcaaaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggactgaacacatcaattgttaatgacac |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28241138 |
tagttaatatgagaggtatcagaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggactgaacacatcaattgttaatgacac |
28241039 |
T |
|
| Q |
101 |
tgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgcctccacatgctaccggaactcctta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28241038 |
tgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgcctccacatgctaccggaactcctta |
28240939 |
T |
|
| Q |
201 |
caagacacaaaagcatcacaattaattttaatcattccatctagggc----ctgcaaccaaaaaattgattcaccttatggacttctagttgagggctta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28240938 |
caagacacaaaagcatcacaattaattttaatcattccatctagggccggtctgcaaccaaaaaattgattcaccttatggactgctagttgagggctta |
28240839 |
T |
|
| Q |
297 |
taggagtgcattc |
309 |
Q |
| |
|
||||||||||||| |
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| T |
28240838 |
taggagtgcattc |
28240826 |
T |
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