View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_high_37 (Length: 299)
Name: NF4780_high_37
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 1413244 - 1413518
Alignment:
| Q |
10 |
gcagagatgtatgttgcgacgacagggtgcaatatgagcag-tcttcattataatttttaaaaatctacattcatgtctatttagatttagactttttat |
108 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1413244 |
gcagatatgtatgttgcgacgacaaggtgcaatatgagcaggtcttcattataatttttaaaaatctacattcatgtctatttagatttagactttttat |
1413343 |
T |
|
| Q |
109 |
ctaaaactaaaattgataagnnnnnnnnntaaagataagagaggagttgaaaatgaaattgacataattaaagtaatttaaaagttggttgccgtttcat |
208 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| | |||||| |
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| T |
1413344 |
ctaaaactaaaattgataagcaaaaaaaataaagataagagaggagttgaaaatgaaattaatatagttaaagtaatttaaaagttggttgtcatttcat |
1413443 |
T |
|
| Q |
209 |
acttgaatttgcttttttaagtgtctataatatccactgccatacatatgtagtaatttttggaacaatataaagg |
284 |
Q |
| |
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|||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1413444 |
acttgaatttgc-tttttaagtatctacaaaatccactgccatacatatgtagtaatttttggaacaataaaaagg |
1413518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 29782164 - 29782407
Alignment:
| Q |
41 |
atatgagcag-tcttcattataatttttaaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagnnnnnnnnnta |
139 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29782164 |
atatgagcaggtcttcattataatttttaaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagcaaaaaaaata |
29782263 |
T |
|
| Q |
140 |
aagataagagaggagttgaaaatgaaattgacataattaaagtaatttaaaagttggttgccgtttcatacttgaatttgcttttttaagtgtctataat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||| || |
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| T |
29782264 |
aagataagagaggagttgaaaatgaaattgacataattaaagtaatttaaaagttggccgtcgtttcatacttgaatttac-tttttaagtgtctacaaa |
29782362 |
T |
|
| Q |
240 |
atccactgccatacatatgtagtaatttttggaacaatataaagg |
284 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29782363 |
atccactgccatacatatgtagtaatttttggaacaataaaaagg |
29782407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 509137 - 509026
Alignment:
| Q |
166 |
attgacataattaaagtaatttaaaagttggttgccgtttcatacttgaatttgcttttttaagtgtctataatatccactgccatacatatgtagtaat |
265 |
Q |
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|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||| |
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|
| T |
509137 |
attgacataattaaagtaatttaaaagttggtcgtcgtttcatacttgaatttgct-ttttaagtgtctacaaaatccactgccatacatatggagtaat |
509039 |
T |
|
| Q |
266 |
ttttggaacaata |
278 |
Q |
| |
|
|||||||| |||| |
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|
| T |
509038 |
ttttggaataata |
509026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 509198 - 509164
Alignment:
| Q |
12 |
agagatgtatgttgcgacgacagggtgcaatatga |
46 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
509198 |
agagatgtatgttgcgacgacagggtgcaatatga |
509164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 46121347 - 46121557
Alignment:
| Q |
16 |
atgtatgttgcgacgacagggtgcaatatgagcag-tcttcattataatttttaaaaatctacattcatgtctatttagatttagactttttatctaaaa |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46121347 |
atgtatgttgcgacgatagggtgcaatatgagcaggtcttcattataatttttaaaaatctaaattcatgtctatttagatttagactttttatctaaaa |
46121446 |
T |
|
| Q |
115 |
ctaaaattgataagnnnnnnnnntaaagataagagaggagttgaaaatgaaattgacataattaaagtaatttaaaagttggttgccgtttcatacttga |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46121447 |
ctaaaattgataagcaaaaaaaataaagataagagaggagttgaaaatgaaattgacataattaaagtaatttaaaagttggttgccgtttcatacttga |
46121546 |
T |
|
| Q |
215 |
atttgcttttt |
225 |
Q |
| |
|
||||||||||| |
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|
| T |
46121547 |
atttgcttttt |
46121557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 46122140 - 46122198
Alignment:
| Q |
226 |
taagtgtctataatatccactgccatacatatgtagtaatttttggaacaatataaagg |
284 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||| |||||||||||||| ||||| |
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|
| T |
46122140 |
taagtgtctacaaaatccactgacatacatatgtagtattttttggaacaataaaaagg |
46122198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 2788569 - 2788520
Alignment:
| Q |
140 |
aagataagagaggagttgaaaatgaaattgacata-attaaagtaattta |
188 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| |||||||||||||| |
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|
| T |
2788569 |
aagataagagagaagttgaaactgaaatttacatagattaaagtaattta |
2788520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 35578326 - 35578117
Alignment:
| Q |
68 |
aaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagnnnnnnnnntaaagataagagaggagttgaaaatgaaat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |
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|
| T |
35578326 |
aaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagcaaaaaaaataaagataagagaagagttgaaaatgacat |
35578227 |
T |
|
| Q |
168 |
tgacataattaaagtaatttaaaagttggttgccgtttcatacttgaatttgcttttttaagtgtctataatatccactgccatacatatgtagtaattt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||| |
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|
| T |
35578226 |
tgacataattaaagtaatttaaaagttggtcgtcgtttcatacttgaatttgct-ttttaagtgtctacaaaatccaccgccatacatatgtagtaattt |
35578128 |
T |
|
| Q |
268 |
ttggaacaata |
278 |
Q |
| |
|
||||||||||| |
|
|
| T |
35578127 |
ttggaacaata |
35578117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 35578386 - 35578357
Alignment:
| Q |
10 |
gcagagatgtatgttgcgacgacagggtgc |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
35578386 |
gcagagatgtatgttgcgacgacagggtgc |
35578357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 44922753 - 44922544
Alignment:
| Q |
68 |
aaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagnnnnnnnnntaaagataagagaggagttgaaaatgaaat |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |
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|
| T |
44922753 |
aaaaatctacattcatgtctatttagatttagactttttatctaaaactaaaattgataagcaaaaaaaataaagataagagaagagttgaaaatgacat |
44922654 |
T |
|
| Q |
168 |
tgacataattaaagtaatttaaaagttggttgccgtttcatacttgaatttgcttttttaagtgtctataatatccactgccatacatatgtagtaattt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| || |||||| ||||| ||||||||||||||| |
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|
| T |
44922653 |
tgacataattaaagtaatttaaaagttggtcgtcgtttcatacttgaatttgct-ttttaagtgtctacaaaatccaccgccatgcatatgtagtaattt |
44922555 |
T |
|
| Q |
268 |
ttggaacaata |
278 |
Q |
| |
|
||||||||||| |
|
|
| T |
44922554 |
ttggaacaata |
44922544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 44922813 - 44922784
Alignment:
| Q |
10 |
gcagagatgtatgttgcgacgacagggtgc |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44922813 |
gcagagatgtatgttgcgacgacagggtgc |
44922784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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