View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_50 (Length: 279)
Name: NF4780_high_50
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_50 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 6326383 - 6326125
Alignment:
| Q |
19 |
caactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattccaaatgcaa |
118 |
Q |
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| T |
6326383 |
caactcttctataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattgcaaatgcaa |
6326284 |
T |
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| Q |
119 |
cttcaac------ttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttccccnnnnnnnnagtaga |
212 |
Q |
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| T |
6326283 |
cttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttccccttttttttagtaga |
6326184 |
T |
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| Q |
213 |
accctgtttttccattcaag-nnnnnnnnnagtcaattgaagttcaatactagtataat |
270 |
Q |
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| T |
6326183 |
accctgtttttccattcaagatttttttttagtcaattgaagttcaatactagtataat |
6326125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 6333866 - 6333717
Alignment:
| Q |
19 |
caactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagc------tacaattc |
109 |
Q |
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| T |
6333866 |
caactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagtttagtttgaagaacaatggctgaattaggagctacaattacaattc |
6333767 |
T |
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| Q |
110 |
caaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaatt |
159 |
Q |
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| T |
6333766 |
caaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 6242427 - 6242582
Alignment:
| Q |
34 |
aaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgc------aacttcaa |
124 |
Q |
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| T |
6242427 |
aaaagcaatattgaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaa |
6242526 |
T |
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| Q |
125 |
cttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacatt |
180 |
Q |
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| T |
6242527 |
cttcatcggattcaataaggtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6220914 - 6220993
Alignment:
| Q |
19 |
caactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaa---gagtttaacgaacaatggctgaatt |
95 |
Q |
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| T |
6220914 |
caactattatataagtaaaccaatattgaagcatgtgttgtactcatcaaaagttgagtttgaagaacaatggcagaatt |
6220993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 643 - 810
Alignment:
| Q |
34 |
aaaagcaatattgaagaatgtgttgtactcatca---aaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaactt |
127 |
Q |
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| T |
643 |
aaaagcaatattgaagaatgtgttgtactcatcatcaaaagttgagtttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaactt |
742 |
T |
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| Q |
128 |
catcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttc |
195 |
Q |
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| T |
743 |
catcagattcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttc |
810 |
T |
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