View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_55 (Length: 253)
Name: NF4780_high_55
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 44647016 - 44646785
Alignment:
| Q |
22 |
attcctcacatatagatatggtaaaagtagcaagacgacaaagaaggatttatgacttcattatagatgtaagcatgttagacattatctttattaggtt |
121 |
Q |
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| T |
44647016 |
attcctcacatatagatatggtaaaagtagcaagacgacaaagaaggatttatgacttcattatagatgtaagcatgttagacattatctttattaggtt |
44646917 |
T |
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| Q |
122 |
tctataataataagccatttttcttcttcactctattatgctgtggaggtgaaaatcggtttgtgaaaaacgtactcatttgatatgtgtgtgcaattga |
221 |
Q |
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| T |
44646916 |
tccataataataagccatttttcttcttcactctattatgctgtggaggtgaaaatcggtttgtgaaaaacgtactcatttgatatgtgtgtgcaaatga |
44646817 |
T |
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| Q |
222 |
tacttgacttggaacccttaaattagttacat |
253 |
Q |
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| T |
44646816 |
tacttgacttggaacccttaaattagttacat |
44646785 |
T |
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