View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_63 (Length: 249)
Name: NF4780_high_63
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 43164940 - 43164701
Alignment:
| Q |
8 |
ataatactagtagacaatcattcttctcttgtgaaaaagttgcttgtctttagtgaaatggaactatagatgaggaaaatggcagcttaagacgtgatat |
107 |
Q |
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| T |
43164940 |
ataatactagtagacaatcattcttctcttgtgaaaaagttgcttgtcttttgtgaaatggaactatagatgaggaaaatggtagcttaagacgtgatat |
43164841 |
T |
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| Q |
108 |
attgttacatgtatcatgaaagaataaagtgctcatatgtgcaggcgttgaccttagttgtaaacaaaaataaatgacattttattcatgtttcacacat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43164840 |
attgttacatgtatcatgaaagaataaagtgctcatatgtgcaggcgttgaccttagttgtaaacaaaaataaatgacattttatttatgtttcacacat |
43164741 |
T |
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| Q |
208 |
tcacatttcgataattaatcacaaaatgtagaaaatacac |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43164740 |
tcacatttcgataattaatcacaaaatgtagaaaatacac |
43164701 |
T |
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