View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_64 (Length: 249)
Name: NF4780_high_64
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_64 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 41863802 - 41864039
Alignment:
| Q |
12 |
ttctctttgaacggaataatgtggatctaaaatggaaacatacatgtcataggatacatcacctatatattattagatgatacaaatagtgatatattaa |
111 |
Q |
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| T |
41863802 |
ttctctttgaacggaataatgtggatctaaaatggaaacatacatgtcataggatacatcacctatatattattagatgatacaaatagtgatatattaa |
41863901 |
T |
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| Q |
112 |
ccaaatttatcttttaataccactttactttgtgagttaaaccatccttcaatcacacattcgtaggaaagcattgaaacacttatttacattccaagca |
211 |
Q |
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| T |
41863902 |
ccaaatttaccttttaataccactttactttgtgagttaaaccatccttcaatcacacattcgtaggaaagcattgaaacacttattcacattccaagca |
41864001 |
T |
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| Q |
212 |
attggtgagtcatattagtggattctttggcagaactt |
249 |
Q |
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| T |
41864002 |
attcgtgagtcatattagtggattctttggcagaactt |
41864039 |
T |
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