View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_65 (Length: 245)
Name: NF4780_high_65
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 23595667 - 23595459
Alignment:
| Q |
19 |
gaacctaatcaagatgaagatcagcaattttatcaggatgagcaattacatttacttttctaccttatgcattagaaatttcaaatcatgtatgcttgat |
118 |
Q |
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| T |
23595667 |
gaacctaatcaagatgaagatcaacaattttatcaggatgagcaattacatttacttttctaccttatgcattagaaatttcaaatcatgcatgcttgat |
23595568 |
T |
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| Q |
119 |
taattgtgacattaaagaaacaaatactgaaacagaataaaaactttggaaaatcaacgatcaagaacttgagaatacttaccgaaaacagtgttagtag |
218 |
Q |
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| T |
23595567 |
taattgtgacattaaagaaacaaatactgaaacagaataaaaacttcggaaaatcaacgatcaagaacttgagaatacttaccgaaaacagtgttggtag |
23595468 |
T |
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| Q |
219 |
ggttcatag |
227 |
Q |
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||||||||| |
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| T |
23595467 |
ggttcatag |
23595459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 23586711 - 23586626
Alignment:
| Q |
148 |
aaacagaataaaaactttggaaaatcaacgatcaagaacttga------gaatacttaccgaaaacagtgttagtagggttcatag |
227 |
Q |
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||||||||||||||||| |||||| || ||| ||||| |||| || |||||||||||||||||||||||||||||||||| |
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| T |
23586711 |
aaacagaataaaaacttcagaaaataaaggattaagaagttgattttaagagtacttaccgaaaacagtgttagtagggttcatag |
23586626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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