View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_66 (Length: 244)
Name: NF4780_high_66
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 44646592 - 44646367
Alignment:
| Q |
1 |
atcttttattgaacttggtcacacattgaatttatggtatggtgagtgacgtgagatgttagaaaaaggaaatgaaaaatgaaatcatatatattctata |
100 |
Q |
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| T |
44646592 |
atcttttattgaacttggtcacacattgaatttatgggatggtgagtgacgtgagatgttagaaaaaggaaatgaaaaatgaaatcatatatattctata |
44646493 |
T |
|
| Q |
101 |
aagaatgtaatactgaaatattcatgaattttgggagtaacaaaccccattggtagaaatttataggttctttaggccaaggcatttgtgtctctaacaa |
200 |
Q |
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| T |
44646492 |
aagaatgtaatactgaaatattcatgaattttgggagtaacaaaccccattggtagaaatttataggttctttaggccaaggcatttgtgtctctaacaa |
44646393 |
T |
|
| Q |
201 |
gaaggtgaaaacttaaaattgatttc |
226 |
Q |
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||| |||||||||||||||||||||| |
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| T |
44646392 |
gaacgtgaaaacttaaaattgatttc |
44646367 |
T |
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