View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4780_high_70 (Length: 239)
Name: NF4780_high_70
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1278817 - 1278594
Alignment:
| Q |
1 |
taattggttaaacacttttcgctatgcaatcgtgcgacaattgcttgtgatggatagcactcctcttatattatatcattgttaaagcaattaaatgggc |
100 |
Q |
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| T |
1278817 |
taattggttaaacacttttcgctatacaatcgtgagacaattgcttgtgatggatagcactcctcttatattatatcatcgttaaagcaattaaatgggc |
1278718 |
T |
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| Q |
101 |
tatctcggtccaaccaactttggctcgacgagcctaactacataaataggtcggattagattgtcttgcttgttactaagctgtacgttattaagccaga |
200 |
Q |
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| T |
1278717 |
tatctcggtccaaccaactttggctcgacgagcctaactacataaataggtcggattagattgtcttgcttgttattaagctgtacattattaagccaga |
1278618 |
T |
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| Q |
201 |
ttcatccattatgggctatatgtg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1278617 |
ttcatccattatgggctatatgtg |
1278594 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 38997717 - 38997765
Alignment:
| Q |
17 |
tttcgctatgcaatcgtgcgacaattgcttgtgatggatagcactcctc |
65 |
Q |
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|||||||||||||||||| |||||||||| | |||| |||||||||||| |
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| T |
38997717 |
tttcgctatgcaatcgtgagacaattgctcgcgatgcatagcactcctc |
38997765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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