View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4780_high_77 (Length: 231)
Name: NF4780_high_77
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4780_high_77 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 28832804 - 28832592
Alignment:
| Q |
1 |
caataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatggaaaagtgataacatagtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28832804 |
caataacttgaaaggaacgtacatggtaccaaaattattaacctgaaatacacaataaatatgacaataaactttttatggaaaagtgataacatagtac |
28832705 |
T |
|
| Q |
101 |
acgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaacattcatatctatccataactttgaannnnnnnatgaatgtggatatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28832704 |
acgcaaccatggatggagggggcatgctaaaaacaataatgaattcaaaatatccatatctatccataactttgaatttttttatgaatgtggatatgga |
28832605 |
T |
|
| Q |
201 |
caaactcttaggt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28832604 |
caaactcttaggt |
28832592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University