View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4780_high_83 (Length: 216)

Name: NF4780_high_83
Description: NF4780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4780_high_83
NF4780_high_83
[»] chr5 (9 HSPs)
chr5 (2-216)||(1725126-1725340)
chr5 (1-216)||(1724858-1725073)
chr5 (1-138)||(1724720-1724857)
chr5 (62-216)||(1739535-1739695)
chr5 (88-216)||(1744904-1745032)
chr5 (60-159)||(1739362-1739467)
chr5 (60-149)||(1744705-1744800)
chr5 (140-216)||(1763747-1763823)
chr5 (10-58)||(1760559-1760607)
[»] chr3 (5 HSPs)
chr3 (96-216)||(3167617-3167737)
chr3 (110-216)||(3156554-3156660)
chr3 (103-212)||(3138826-3138935)
chr3 (2-169)||(2023090-2023257)
chr3 (4-58)||(3138974-3139025)
[»] chr8 (2 HSPs)
chr8 (71-216)||(23852457-23852605)
chr8 (155-197)||(23856930-23856972)
[»] chr7 (3 HSPs)
chr7 (104-197)||(7490840-7490933)
chr7 (104-175)||(7484108-7484179)
chr7 (98-149)||(9011749-9011800)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 1725126 - 1725340
Alignment:
Q  2 ccttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttctcttcctcttgttagtttgagaaatatggagagtagttataatgggg 101  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1725126 ccttttgggtatagtaatggtgctttgtgtttgcaagagatgttaaacccttctcttcctcttgttagtttgagaaatatggagagtagttataatgggg 1725225  T
Q  102 ctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaaca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1725226 ctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaaca 1725325  T
Q  202 tgttgctacaagttc 216  Q
    |||||||||||||||    
T  1725326 tgttgctacaagttc 1725340  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1724858 - 1725073
Alignment:
Q  1 cccttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttctcttcctcttgttagtttgagaaatatggagagtagtta------t 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||      || |||||||||||| |||||||||| ||||| |      |    
T  1724858 cccttttgggtatagtaatggtactttgggtttgcaagagatgttaaaccctt------cttttgttagtttgaaaaatatggagggtagtaatagtact 1724951  T
Q  95 aatggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattctt 194  Q
    | ||| | |||  ||||||||||||||||||||||| |||||||||||||||||  || |||||| |||||| |||  ||| | || || ||||||||||    
T  1724952 agtggagttggggttctaggtattggtggtggaactgcttcaaggattgaagatagcaaaaataacaaaatttgtggcattctaaagtgcggagattctt 1725051  T
Q  195 ctaaacatgttgctacaagttc 216  Q
      ||| |||||||| |||||||    
T  1725052 tcaaaaatgttgcttcaagttc 1725073  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 1724720 - 1724857
Alignment:
Q  1 cccttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttctcttcctcttgttagtttgagaaatatggagagtagttataa---- 96  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| ||||| ||||        
T  1724720 cccttttgggtataataatggtgctttgggtttgcaagagatgttaaaccctt------ctcttgttagtttgagaaatatggagggtagtaataataat 1724813  T
Q  97 --tggggctggaattctaggtattggtggtggaactacttcaag 138  Q
      ||| | ||| ||||||||||||||||||||||||||||||||    
T  1724814 agtggagttgggattctaggtattggtggtggaactacttcaag 1724857  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 1739535 - 1739695
Alignment:
Q  62 cttgttagtttgagaaatatggagagtag------ttataatggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaa 155  Q
    |||||||||||||||||||||||| ||||      | ||| ||||||||||||||||||  ||||||||| |||| |||| |||||||||||||  || |    
T  1739535 cttgttagtttgagaaatatggagggtagcaatagtaatagtggggctggaattctaggatttggtggtgcaactgcttcgaggattgaagatggtacga 1739634  T
Q  156 ataataaaattggtgctatttttaaatggggagattcttctaaacatgttgctacaagttc 216  Q
    || | || |||||||||||| | ||||  ||||||||||||| | ||||||||||||||||    
T  1739635 atgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 1739695  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 1744904 - 1745032
Alignment:
Q  88 tagttataatggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatgggga 187  Q
    |||| ||| |||| |||||||| ||||  ||||||||| |||| ||||||||||||||||||  |  ||||| || ||||||||||||  |||||  |||    
T  1744904 tagtaatagtgggactggaattttaggatttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttgga 1745003  T
Q  188 gattcttctaaacatgttgctacaagttc 216  Q
    |||||||||| | ||||||| ||||||||    
T  1745004 gattcttctacaaatgttgccacaagttc 1745032  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 1739362 - 1739467
Alignment:
Q  60 ctcttgttagtttgagaaatatggagagtagttataat------ggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacac 153  Q
    |||||||| |||||||||| |||||||||||| ||| |      ||||  |||||||||||  ||||||||  |||||||||||||||||||||||  ||    
T  1739362 ctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaaggattgaagatggtac 1739461  T
Q  154 aaataa 159  Q
    ||||||    
T  1739462 aaataa 1739467  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 1744705 - 1744800
Alignment:
Q  60 ctcttgttagtttgagaaatatggagagtagttataat------ggggctggaattctaggtattggtggtggaactacttcaaggattgaagatg 149  Q
    ||||| ||||||||||||| |||||||||||| ||| |      ||||  |||||||||||  ||||||||| || ||||||||||||||||||||    
T  1744705 ctcttattagtttgagaaacatggagagtagtaatagtaatcgtggggtaggaattctaggatttggtggtgcaattacttcaaggattgaagatg 1744800  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 1763747 - 1763823
Alignment:
Q  140 attgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaacatgttgctacaagttc 216  Q
    |||| ||| |||||||||||||| ||||||| | ||||||||| ||||||||||||   | | ||||||||||||||    
T  1763747 attggagaagacacaaataataatattggtgttttttttaaattgggagattcttcctcaaacgttgctacaagttc 1763823  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 1760559 - 1760607
Alignment:
Q  10 gtatagtaatggtactttgggtttgcaagagatgttaaacccttctctt 58  Q
    |||||||||||||  |||| ||||| ||||||| |||||||||||||||    
T  1760559 gtatagtaatggtgttttgagtttgaaagagatattaaacccttctctt 1760607  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 3167617 - 3167737
Alignment:
Q  96 atggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttc 195  Q
    |||||| ||||||||| ||||||||||||| || |||||||||||| |||||||  |||||||||||||||||||||||| | ||||  |||||||||||    
T  3167617 atggggttggaattcttggtattggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttc 3167716  T
Q  196 taaacatgttgctacaagttc 216  Q
    || | ||||||||||||||||    
T  3167717 tacaaatgttgctacaagttc 3167737  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 3156660 - 3156554
Alignment:
Q  110 ctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaacatgttgcta 209  Q
    |||| ||||||||||| || ||||||||||||||||||||  |||||||||||||| ||||||||| | ||||  ||||||||||||| | ||||||||     
T  3156660 ctagctattggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaaaattaggagattcttctacaaatgttgctg 3156561  T
Q  210 caagttc 216  Q
    |||||||    
T  3156560 caagttc 3156554  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 3138935 - 3138826
Alignment:
Q  103 tggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaacat 202  Q
    ||||| ||||||||||||||||| ||||||||||| ||| ||| |||  ||| ||||||||||||||||||||||  ||| |||||||||||||| | |     
T  3138935 tggaaatctaggtattggtggtgcaactacttcaaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctacaaag 3138836  T
Q  203 gttgctacaa 212  Q
    ||||||||||    
T  3138835 gttgctacaa 3138826  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 2023090 - 2023257
Alignment:
Q  2 ccttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttctcttcctcttgttagtttgagaaatatggag------agtagttata 95  Q
    |||||||||||| ||||||||  |||||||||||||||||| ||||||||||      ||||||||||||||||||||||||||      | |||| ||     
T  2023090 ccttttgggtatggtaatggtggtttgggtttgcaagagatattaaaccctt------ctcttgttagtttgagaaatatggagggcagtaatagtaatt 2023183  T
Q  96 atggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggt 169  Q
     | ||| ||||||||||||||  || | || |||||||| ||||||||||||||    ||||||||||||||||    
T  2023184 ctagggttggaattctaggtaccggggatgcaactactttaaggattgaagatggtgaaaataataaaattggt 2023257  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 3139025 - 3138974
Alignment:
Q  4 ttttgggtatagtaatggtactttgggtttgcaagagatgttaaacccttctctt 58  Q
    ||||||||||||| || || |||||   |||||||||||||||||||||||||||    
T  3139025 ttttgggtatagtcatagtgctttg---ttgcaagagatgttaaacccttctctt 3138974  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 23852457 - 23852605
Alignment:
Q  71 ttgagaaatatggagagtagttataatggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaata---ataaaattg 167  Q
    ||||||||||||| | ||||| |||  |||  |||||  ||||||||||| |||| |||||||||||| || |||||||  |||||||   |||||||||    
T  23852457 ttgagaaatatggggggtagtaatagagggtttggaaacctaggtattggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattg 23852556  T
Q  168 gtgctatttttaaatggggagattcttctaaacatgttgctacaagttc 216  Q
    |||||||||| |||| |||||||||||||| | || |||||||||||||    
T  23852557 gtgctattttaaaattgggagattcttctacaaatattgctacaagttc 23852605  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 23856930 - 23856972
Alignment:
Q  155 aataataaaattggtgctatttttaaatggggagattcttcta 197  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||    
T  23856930 aataataaaattggtgctattttaaaattgggagtttcttcta 23856972  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 7490933 - 7490840
Alignment:
Q  104 ggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttcta 197  Q
    |||| ||||||| ||||||| | || ||||||||| ||||||||||  |||||||||||||||||||||||| | |||   |||||||||||||    
T  7490933 ggaactctaggttttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagattcttcta 7490840  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 7484179 - 7484108
Alignment:
Q  104 ggaattctaggtattggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatt 175  Q
    |||| ||||||| ||||||| | || ||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  7484179 ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctatt 7484108  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 9011800 - 9011749
Alignment:
Q  98 ggggctggaattctaggtattggtggtggaactacttcaaggattgaagatg 149  Q
    |||||||||||||||||  ||||||||| ||||| ||||| |||||||||||    
T  9011800 ggggctggaattctagggtttggtggtgcaactagttcaaagattgaagatg 9011749  T

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